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- .gitignore 0 additions, 2 deletions.gitignore
- ChipathlonMethodParameters.xlsx 0 additions, 0 deletionsChipathlonMethodParameters.xlsx
- chipathlon/conf.py 56 additions, 8 deletionschipathlon/conf.py
- chipathlon/db.py 78 additions, 27 deletionschipathlon/db.py
- chipathlon/generators/align_generator.py 65 additions, 53 deletionschipathlon/generators/align_generator.py
- chipathlon/generators/idr_generator.py 52 additions, 37 deletionschipathlon/generators/idr_generator.py
- chipathlon/generators/module_generator.py 131 additions, 94 deletionschipathlon/generators/module_generator.py
- chipathlon/generators/peak_call_generator.py 80 additions, 64 deletionschipathlon/generators/peak_call_generator.py
- chipathlon/generators/remove_duplicates_generator.py 37 additions, 27 deletionschipathlon/generators/remove_duplicates_generator.py
- chipathlon/genome.py 9 additions, 2 deletionschipathlon/genome.py
- chipathlon/jobs/modules/align.yaml 103 additions, 109 deletionschipathlon/jobs/modules/align.yaml
- chipathlon/jobs/modules/idr.yaml 10 additions, 13 deletionschipathlon/jobs/modules/idr.yaml
- chipathlon/jobs/modules/peak_call.yaml 288 additions, 239 deletionschipathlon/jobs/modules/peak_call.yaml
- chipathlon/jobs/modules/remove_duplicates.yaml 27 additions, 33 deletionschipathlon/jobs/modules/remove_duplicates.yaml
- chipathlon/jobs/params/bedtools_bam_to_bed.yaml 4 additions, 5 deletionschipathlon/jobs/params/bedtools_bam_to_bed.yaml
- chipathlon/jobs/params/bowtie2_align_paired.yaml 18 additions, 28 deletionschipathlon/jobs/params/bowtie2_align_paired.yaml
- chipathlon/jobs/params/bowtie2_align_single.yaml 16 additions, 25 deletionschipathlon/jobs/params/bowtie2_align_single.yaml
- chipathlon/jobs/params/bwa_align_paired.yaml 15 additions, 22 deletionschipathlon/jobs/params/bwa_align_paired.yaml
- chipathlon/jobs/params/bwa_align_single.yaml 13 additions, 19 deletionschipathlon/jobs/params/bwa_align_single.yaml
- chipathlon/jobs/params/bwa_sai_to_sam.yaml 15 additions, 21 deletionschipathlon/jobs/params/bwa_sai_to_sam.yaml
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