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Added download script. Updated job yaml. Updated module yaml. Add...
Added download script. Updated job yaml. Updated module yaml. Add executable loading to workflow code. Updated database validation for new inputs.
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- chipathlon/conf.py 3 additions, 0 deletionschipathlon/conf.py
- chipathlon/db.py 13 additions, 24 deletionschipathlon/db.py
- chipathlon/jobs/modules/align.yaml 43 additions, 6 deletionschipathlon/jobs/modules/align.yaml
- chipathlon/jobs/params/bwa_align_paired.yaml 9 additions, 1 deletionchipathlon/jobs/params/bwa_align_paired.yaml
- chipathlon/jobs/params/bwa_align_single.yaml 9 additions, 1 deletionchipathlon/jobs/params/bwa_align_single.yaml
- chipathlon/jobs/params/bwa_sai_to_sam.yaml 1 addition, 1 deletionchipathlon/jobs/params/bwa_sai_to_sam.yaml
- chipathlon/scripts/download_fastq.py 22 additions, 0 deletionschipathlon/scripts/download_fastq.py
- chipathlon/test/run/run.yaml 2 additions, 4 deletionschipathlon/test/run/run.yaml
- chipathlon/utils.py 29 additions, 30 deletionschipathlon/utils.py
- chipathlon/workflow.py 36 additions, 24 deletionschipathlon/workflow.py
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