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Fixed minor issues in param yaml scripts. Updated workflow to add jobs and...
Fixed minor issues in param yaml scripts. Updated workflow to add jobs and create relevant pegasus information. Workflow can now generate download and alignment jobs, still needs testing. Setup updated to include job-scripts.
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- chipathlon/conf.py 3 additions, 0 deletionschipathlon/conf.py
- chipathlon/jobs/params/bedtools_bam_to_bed.yaml 1 addition, 1 deletionchipathlon/jobs/params/bedtools_bam_to_bed.yaml
- chipathlon/jobs/params/macs2_callpeak.yaml 1 addition, 1 deletionchipathlon/jobs/params/macs2_callpeak.yaml
- chipathlon/jobs/params/picard_mark_duplicates.yaml 5 additions, 4 deletionschipathlon/jobs/params/picard_mark_duplicates.yaml
- chipathlon/test/run/param.yaml 24 additions, 0 deletionschipathlon/test/run/param.yaml
- chipathlon/tester.py 4 additions, 3 deletionschipathlon/tester.py
- chipathlon/workflow.py 155 additions, 64 deletionschipathlon/workflow.py
- chipathlon/workflow_job.py 2 additions, 2 deletionschipathlon/workflow_job.py
- chipathlon/workflow_module.py 1 addition, 5 deletionschipathlon/workflow_module.py
- setup.py 1 addition, 1 deletionsetup.py
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