Small updates to many yaml files.  All peak callers now generating successfully.  Adjusted file_list input loding.  Fixed chip-job-ccat-format-bed to create correct number of columns.

Updated param files and remove_duplicates yaml & generator to successfully generator job.  Fixed a bug where workflow_job validation was crashing on non-string values.

Adjust the input format of the align.yaml module.  Fixed up minor issues across workflow job, module, and generator to get jobs correctly generating.

Fixed minor issues with job yaml files.  bowtie2 had wrong genome type specified.  Updated db_save_result to match new standard.

Updated workflow module parsing to support new format.  Argument types are now loaded from workflow_job data instead of being repeated within the module itself.

Updated workflow_job to use internal type values for arguments instead of passed ones.  No longer need types included in workflow_module.

Removed unnecessary print statement.  Added optionally argument loading.  Fixed valid workflow generation test.

Job argumnet creation is now actually legible AND works with the new style of inputs/outputs as well as job definition files.

Standardized and cleaned up test folder.  All files no loaded from base locations.  Each test class has a __name__ == __main__ to run just the individual test case.

Small quality of life change for the database tests to make sure users know they need to create an auth.yaml script.

Heavily updated workflow_job parsing & validation.  Addeded several tests to confirm the validity of new parsing.  additional_inputs no longer exist, and input / output files are defined as dicts instead of lists.  References refer directly to the dict key names instead of a list index.

Updated format bed script.  Removed unnecessayr libraries, and removed reference to ladunga's home directory.