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Commit 18f43f35 authored by eharstad's avatar eharstad
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fixing qiime module version

parent 565492fe
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content/applications/app_specific/bioinformatics_tools/qiime.md
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...@@ -44,7 +44,7 @@ Sample QIIME submit script to run **pick_open_reference_otus.py** is: ...@@ -44,7 +44,7 @@ Sample QIIME submit script to run **pick_open_reference_otus.py** is:
#SBATCH --output=qiime.%J.out #SBATCH --output=qiime.%J.out
#SBATCH --error=qiime.%J.err #SBATCH --error=qiime.%J.err
module load qiime/2.0 module load qiime/1.9
pick_open_reference_otus.py --parallel --jobs_to_start $SLURM_CPUS_ON_NODE -i /work/[groupname]/[username]/input.fasta -o /work/[groupname]/[username]/project/out_${SLURM_JOB_ID} pick_open_reference_otus.py --parallel --jobs_to_start $SLURM_CPUS_ON_NODE -i /work/[groupname]/[username]/input.fasta -o /work/[groupname]/[username]/project/out_${SLURM_JOB_ID}
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