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fixed attachments/links in 2016 events

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content/events/2016/hcc_fall_kickstart_2016.md
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......@@ -10,78 +10,32 @@ Where:  Sept. 8th - UNL City Campus Nebraska Union - Colonial Room A&B
Sept. 9th - Whittier Hall room 152
Quick
Link: <a href="http://go.unl.edu/kickstart2016" class="external-link">http://go.unl.edu/kickstart2016</a><a href="http://go.unl.edu/kickstart2015" class="external-link"></a>
------------------------------------------------------------------------
Materials
---------
Etherpad: <a href="https://public.etherpad-mozilla.org/p/2016-09-08-UNL" class="external-link">https://public.etherpad-mozilla.org/p/2016-09-08-UNL</a><a href="https://etherpad.mozilla.org/2015-09-08" class="external-link"></a>
Etherpad: no longer supported
Software Carpentry
Lessons: <a href="https://eharstad.github.io/2016-09-08-UNL/" class="external-link">https://eharstad.github.io/2016-09-08-UNL/</a>
Slides for Thursday intro:
[Kickstart-UNL-20160908.pdf](attachments/16519552/16519722.pdf)
[Kickstart-UNL-20160908.pdf](https://unl.box.com/s/4jfqrrr17zjz32l4mh30zp187a7xjxb1)
[Kickstart-UNL-20160908.pptx](attachments/16519552/16519721.pptx)
[Kickstart-UNL-20160908.pptx](https://unl.box.com/s/rmgenmdnicffo5kk30o1jhm4p9bqj4v9)
Slides for Friday morning session:
[HCC\_introduction.pdf](attachments/16519552/16519738.pdf)
[HCC\_introduction.pdf](https://unl.box.com/s/jjn41uqq39e7i3dijr31ruvyatjvd7vf)
Slides for Friday afternoon session:
[MPI\_overview.pdf](attachments/16519552/16519727.pdf)
[MPI\_overview.ppt](attachments/16519552/16519728.ppt)
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[Kickstart-UNL-20160908.pptx](attachments/16519552/16519735.pptx)
(application/vnd.openxmlformats-officedocument.presentationml.presentation)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[Kickstart-UNL-20160908.pdf](attachments/16519552/16519724.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[Kickstart-UNL-20160908.pdf](attachments/16519552/16519734.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[MPI\_overview.pdf](attachments/16519552/16519727.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[MPI\_overview.ppt](attachments/16519552/16519728.ppt)
(application/vnd.ms-powerpoint)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[Kickstart-UNL-20160908.pdf](attachments/16519552/16519722.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[Kickstart-UNL-20160908.pptx](attachments/16519552/16519721.pptx)
(application/vnd.openxmlformats-officedocument.presentationml.presentation)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_HCC\_Kickstart.pdf](attachments/16519552/16519881.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_HCC\_Kickstart.pdf](attachments/16519552/16519882.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_HCC\_Kickstart.pdf](attachments/16519552/16519884.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_HCC\_Kickstart.pdf](attachments/16519552/16519738.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[anyconnect-macosx-4.2.00096-web-deploy-k9.dmg](attachments/16519552/16519885.dmg)
(application/x-diskcopy)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[anyconnect-win-4.2.01022-web-deploy-k9.exe](attachments/16519552/16519886.exe)
(application/octet-stream)
[MPI\_overview.pdf](https://unl.box.com/s/q8zpmbs42ua4126yp8av14e5r8xz63v7)
[MPI\_overview.ppt](https://unl.box.com/s/3z5nwu10xd2j89pohbnhaczn813r9iob)
content/events/2016/hcc_qiime_workshop_2016.md
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......@@ -9,29 +9,24 @@ Where:  NIC Food Innovation Campus room 277
1901 N. 21st St., Lincoln, 68588
Quick
Link: <a href="http://go.unl.edu/hccqiime2016" class="external-link">http://go.unl.edu/hccqiime2016</a>
<a href="https://hcc.unl.edu/hcc-qiime-workshop" class="external-link">Details and Agenda</a>
<a href="https://marketplace.unl.edu/default/hcc-qiime-workshop.html" class="external-link">Registration Page</a>
------------------------------------------------------------------------
Materials
---------
Slides for morning
introduction: [QIIME\_2016\_intro.pdf](attachments/16520950/16521053.pdf)
introduction: [QIIME\_2016\_intro.pdf](https://unl.box.com/s/d2o92uoar7x59a7rxl0f3y7o3ncy0swq)
Software Carpentry Unix Shell
Lessons: <a href="http://eharstad.github.io/shell-novice/" class="external-link">http://eharstad.github.io/shell-novice/</a>
Slides for HCC
Overview: [2016\_Qiime.pdf](attachments/16520950/16521050.pdf)
Overview: [2016\_Qiime.pdf](https://unl.box.com/s/4gryu7ny8lo95fs8clyu566k2ubbhtef)
QIIME
slides: [QIIME\_Talk\_Oct20.pdf](attachments/16520950/16521073.pdf)
slides: [QIIME\_Talk\_Oct20.pdf](https://unl.box.com/s/h4zi0h27t1t16u9due3ybfrxmsdebzin)
QIIME
tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="external-link">http://bioinformatics.unl.edu/qiime_tutorial.pdf</a><a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="external-link"></a>
......@@ -56,9 +51,9 @@ tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="ext
Thursday, please arrive at the workshop by 8:30AM to get help.
2. Once you have your HCC account and DUO set up, please make sure that
you are able to log into the HCC clusters (instructions for [Windows
Users](https://hcc-docs.unl.edu/display/HCCDOC/For+Windows+Users)
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/)
and [Mac/Linux
Users](https://hcc-docs.unl.edu/pages/viewpage.action?pageId=2851290)).
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
If you have any problems logging in, please email us at
<a href="mailto:hcc-support@unl.edu" class="external-link">hcc-support@unl.edu</a>.
3. On Thursday we will be demonstrating how to transfer files using
......@@ -74,21 +69,3 @@ tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="ext
<a href="https://docs.globus.org/how-to/globus-connect-personal-windows/" class="external-link">Windows</a>)
so that you can begin using Globus to transfer data to and from your
laptop.
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_Qiime.pdf](attachments/16520950/16521050.pdf) (application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[QIIME\_2016\_intro.pdf](attachments/16520950/16521053.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[QIIME\_Talk\_Oct20.pdf](attachments/16520950/16521073.pdf)
(application/pdf)
content/events/2016/instructions_for_52016_allinea_workshop.md
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......@@ -35,22 +35,18 @@ these instructions to setup the Allinea client on your laptop.
First, download and install the remote client software for either
Windows or OS X
from <a href="https://www.allinea.com/products/forge/download#remote-client" class="external-link">this page</a>.
Alternatively, download the software directory for your OS:
<a href="http://content.allinea.com/downloads/allinea-forge-client-latest-MacOSX-10.7.5-x86_64.dmg" class="external-link">[OS X direct link]</a>
<a href="http://content.allinea.com/downloads/allinea-forge-client-latest-Windows-6.1-x64.exe" class="external-link">[Windows 64-bit direct link]</a>
<a href="http://content.allinea.com/downloads/allinea-forge-client-latest-Windows-6.1-x86.exe" class="external-link">[Windows 32-bit direct link]</a>
Start the Allinea software, and choose *Configure...* from the *Remote
Launch* dropdown menu.
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515586.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="78" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/configure.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="78" /></span>
Click the *Add* button on the new window.
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515589.png" class="confluence-embedded-image confluence-content-image-border" width="400" height="322" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/add.png" class="confluence-embedded-image confluence-content-image-border" width="400" height="322" /></span>
To setup a connection to Crane, fill in the fields as follows:
......@@ -61,7 +57,7 @@ To setup a connection to Crane, fill in the fields as follows:
It should appear similar to this:
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515622.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="306" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/filledfields.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="306" /></span>
Be sure to replace *demo02* with your HCC username.
......@@ -86,12 +82,12 @@ ln -s $WORK/.allinea $HOME/.allinea
To test the connection, choose *Crane* from the *Remote Launch* menu.
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515602.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="114" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/remoteLaunch.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="114" /></span>
A* Connect to Remote Host* dialog will appear and prompt for a password.
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515603.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="310" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/password.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="310" /></span>
The login procedure is the same as for PuTTY or any other SSH program.
Enter your HCC password followed by the Duo login.
......@@ -124,13 +120,13 @@ On your local machine, a pop-up box should appear prompting you to
accept the Reverse Connect request.
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515613.png" class="confluence-embedded-image confluence-content-image-border" width="450" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/reverse.png" class="confluence-embedded-image confluence-content-image-border" width="450" /></span>
Choose *Accept.* The *Remote Launch *section should change to indicate
you are connected via tunnel, similar to:
<span
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="assets/images/16515582/16515615.png" class="confluence-embedded-image confluence-thumbnail confluence-content-image-border" width="250" /></span>
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/tunnel.png" class="confluence-embedded-image confluence-thumbnail confluence-content-image-border" width="250" /></span>
Once that happens, Reverse Connect is working successfully and a
debugging or profiling session can be started.
......@@ -180,41 +176,4 @@ srun --pty --time=2:00:00 --ntasks=4 --reservation=allinea bash
**Please note that the `--reservation=allinea` option will only work
during the workshop.**
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 11.28.32 AM.png](attachments/16515582/16515586.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 11.32.34 AM.png](attachments/16515582/16515591.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 11.32.34 AM.png](attachments/16515582/16515589.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 11.38.13 AM.png](attachments/16515582/16515595.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.15.43 PM.png](attachments/16515582/16515602.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.17.14 PM.png](attachments/16515582/16515605.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.17.14 PM.png](attachments/16515582/16515603.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.04.42 PM.png](attachments/16515582/16515643.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.05.01 PM.png](attachments/16515582/16515615.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 11.37.09 AM.png](attachments/16515582/16515622.png)
(image/png)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" /> [Screen
Shot 2016-05-16 at 12.04.42 PM.png](attachments/16515582/16515613.png)
(image/png)
content/events/2016/software_carpentry_open_science_grid_workshop_unl_january_6_8_2016.md
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......@@ -13,7 +13,7 @@ Link**: <a href="https://swc-osg-workshop.github.io/2016-01-06-UNL/" class="ext
**Materials**
=============
**Etherpad**: <a href="https://public.etherpad-mozilla.org/p/2016-01-06-UNL" class="external-link">https://public.etherpad-mozilla.org/p/2016-01-06-UNL</a>
**Etherpad**: no longer supported
**Shell
Lesson**: <a href="http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/shell/" class="external-link">http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/shell/</a>
......
content/events/2016/software_carpentry_workshop_uno_july_14_15_2016.md
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......@@ -14,7 +14,7 @@ Link**: <a href="https://npavlovikj.github.io/2016-07-14-UNO/" class="external-
**Materials**
=============
**Etherpad**: <a href="https://public.etherpad-mozilla.org/p/2016-07-14-UNO" class="external-link">https://public.etherpad-mozilla.org/p/2016-07-14-UNO</a>
**Etherpad**: no longer supported
**Shell Lesson**: <span
style="color: rgb(24,54,145);"><a href="http://swcarpentry.github.io/shell-novice/" class="external-link">http://swcarpentry.github.io/shell-novice/</a></span>
......@@ -22,28 +22,12 @@ style="color: rgb(24,54,145);"><a href="http://swcarpentry.github.io/shell-novic
**Git Lesson**: <span
style="color: rgb(24,54,145);"><a href="http://swcarpentry.github.io/shell-novice/" class="external-link">http://swcarpentry.github.io/git-novice/</a></span>
**HCC Lesson**:
**HCC Lesson**: [pdf](https://unl.box.com/s/p5mpahszbu4mwnxas3xzgc6e4ypnthja)
<span
class="confluence-embedded-file-wrapper"><a href="/download/attachments/16516359/2016_July_SWC.pdf?version=2&amp;modificationDate=1468447785000&amp;api=v2" class="confluence-embedded-file"><img src="assets/images/documentConversion/latest/conversion/thumbnail/16517045/2" height="250" /></a></span>
**MatLab Demo**: [matlab](https://unl.box.com/s/z9ihn225txqt7s6xx3d0mfj9o5q6jc7h)
**Python Lesson**: <span
style="color: rgb(24,54,145);"><a href="https://djw8605.github.io/python-novice-inflammation/" class="external-link">https://djw8605.github.io/python-novice-inflammation/</a></span>
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_July\_SWC.pdf](attachments/16516359/16517222.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[matlab\_demo.tar.gz](attachments/16516359/16517221.gz)
(application/x-gzip)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[matlab\_demo.tar.gz](attachments/16516359/16517220.gz)
(application/x-gzip)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016\_July\_SWC.pdf](attachments/16516359/16517045.pdf)
(application/pdf)
content/events/2016/unl_numerical_analysis_class_august_5th_2016.md
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......@@ -7,17 +7,4 @@ Time: 08/05/2016 09:15 am
Location: UNL Avery Room 111
Slides:
<span
class="confluence-embedded-file-wrapper"><a href="/download/attachments/16517815/2016-August.pdf?version=2&amp;modificationDate=1470358211000&amp;api=v2" class="confluence-embedded-file"><img src="assets/images/documentConversion/latest/conversion/thumbnail/16517814/2" height="250" /></a></span>
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016-August.pdf](attachments/16517815/16517817.pdf) (application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[2016-August.pdf](attachments/16517815/16517814.pdf) (application/pdf)
[Slides](https://unl.box.com/s/brxko7y1j777hbzehsdgqeiza0ifuz13)
\ No newline at end of file
content/events/2016/xsede_workshop_big_data_november_2016.md
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......@@ -9,12 +9,9 @@ Where:  Hardin Hall 901, UNL East Campus
3310 Holdrege St., Lincoln, 68583
Quick
Link: <a href="http://go.unl.edu/xsedebigdata_nov2016" class="external-link">http://go.unl.edu/xsedebigdata_nov2016</a><a href="http://go.unl.edu/hccqiime2016" class="external-link"></a>
<a href="http://hcc.unl.edu/xsede-hpc-workshop-big-data" class="external-link">Details</a><a href="https://portal.xsede.org/course-calendar/-/training-user/class/518/session/1096" class="external-link"></a>
<a href="https://public.etherpad-mozilla.org/p/hccxsede" class="external-link">Etherpad</a><a href="https://portal.xsede.org/course-calendar/-/training-user/class/518/session/1096" class="external-link"></a>
Etherpad (no longer supported)
------------------------------------------------------------------------
......@@ -23,12 +20,12 @@ Materials
| Agenda | |
|--------|------------------------------------------------------------------------------------------------------------------------------------------------|
| 10:00 | <a href="http://www.psc.edu/images/xsedetraining/BigDataNov2016/Big_Data_Welcome.pdf" class="external-link">Welcome</a> |
| 10:25 | <a href="http://www.psc.edu/images/xsedetraining/BigDataNov2016/Intro_To_Big_Data.pdf" class="external-link">Intro to Big Data</a> |
| 10:45 | <a href="http://www.psc.edu/images/xsedetraining/BigDataNov2016/BigData_Hadoop_110116.pdf" class="external-link">Hadoop</a> |
| 10:00 | Welcome |
| 10:25 | Intro to Big Data |
| 10:45 | Hadoop |
| 12:00 | Lunch break |
| 1:00 | <a href="http://www.psc.edu/images/xsedetraining/BigDataNov2016/Intro_To_Spark.pdf" class="external-link">Spark intro</a> |
| 3:15 | <a href="http://www.psc.edu/images/xsedetraining/BigDataNov2016/A_Big_Big_Data_Platform.pdf" class="external-link">A Big Big Data Platform</a> |
| 1:00 | Spark intro |
| 3:15 | A Big Big Data Platform |
| 4:00 | Adjourn |
content/events/2016/xsede_workshop_openacc_december_2016.md
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......@@ -9,17 +9,11 @@ Where:  Animal Science C210, UNL East Campus
3940 Fair St., Lincoln, 68583
Quick
Link: <a href="http://go.unl.edu/xsedeopenacc" class="external-link">http://go.unl.edu/xsedeopenacc</a>
<a href="https://hcc.unl.edu/xsede-hpc-workshop-openacc" class="external-link">Details</a>
<a href="https://hcc.unl.edu/xsede-hpc-workshop-openacc" class="external-link"></a><span
style="color: rgb(0,0,0);font-size: 20.0px;">Materials</span>
<a href="https://www.psc.edu/index.php/136-users/training/2430-xsede-hpc-workshop-december-6-2016-openacc" class="external-link">Link to Agenda and Exercises</a>
<a href="https://unl.box.com/s/cmz1xchbm3irqnbr0gro9ndnpyjvngwa" class="external-link">Exercises</a>
<a href="https://public.etherpad-mozilla.org/p/hccopenacc" class="external-link">Etherpad</a>
Etherpad (no longer supported)
......
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