Commit 2ecd7351 authored by Adam Caprez's avatar Adam Caprez
Browse files

Merge branch 'commochameleon' into 'master'

Commochameleon

See merge request !289
parents 28233e96 484c8915
......@@ -96,13 +96,6 @@ under.
### Creating Custom Anaconda Environments
{{% notice info %}}
**NOTE:** By default, conda packages are installed in the user's `home` directory.
Since Crane's `home` directories are not writeable from the worker nodes,
the commands for installing, adding and removing conda packages shown here
should be performed on the **login node**, and not as part of an interactive or SLURM job.
{{% /notice %}}
The `create` command is used to create a new environment. It requires
at a minimum a name for the environment, and at least one package to
install. For example, suppose we wish to create a new environment, and
......@@ -127,6 +120,34 @@ conda activate mynumpy
Our new environment is now active, and we can use it. The shell prompt will change to indicate this as well.
### Using /common for environments
By default, conda environments are installed in the user's `home` directory at `~/.conda/envs`.
This is fine for smaller environments, but larger environments (especially ML/AI-based ones) can quickly
exhaust the space in the `home` directory.
For larger environments, we recommend using the `$COMMON` folder instead. To do so, use the `-p` option
instead of `-n` for `conda create`. For example, creating the same environment as above but
placing it in the folder `$COMMON/mynumpy` instead.
{{% panel theme="info" header="Create environment in /common" %}}
{{< highlight bash >}}
conda create -p $COMMON/mynumpy numpy=1.17
{{< /highlight >}}
{{% /panel %}}
To activate the environment, you must use the full path.
{{% panel theme="info" header="Activate environment in /common" %}}
{{< highlight bash >}}
conda activate $COMMON/mynumpy
{{< /highlight >}}
{{% /panel %}}
**Please note** that you'll need to add the `#SBATCH --licenses=common` directive to your submit scripts
as described [here]({{< relref "using_the_common_file_system" >}}) in order to use environments
in `$COMMON`.
### Adding and Removing Packages from an Existing Environment
To install additional packages in an environment, use the `install`
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