updating globus docs

content/handling_data/data_transfer/globus_connect/_index.md

@@ -36,14 +36,14 @@ more error-prone methods such as scp and winSCP.
 
 Users must first sign up for an account on
 the <a href="https://www.globusid.org/create" class="external-link">Globus Connect website</a> or may use their NU credentials to sign in without creating a separate Globus ID.
- Accounts are free and grant users access to any Globus endpoint for
-which they are authorized.  An endpoint is simply a file system to or
+ Accounts are free and grant users access to any Globus collection for
+which they are authorized.  A collection is simply a file system to or
 from which a user transfers files.  All HCC users are authorized to
-access their own /home, /work, and /common directories on Crane via the Globus endpoints (named: `hcc#crane`).  Those who have purchased Attic storage space can
-access their /attic directories via the Globus endpoint hcc\#attic. To
-initialize or activate the endpoint, users will be required to enter
+access their own /home, /work, and /common directories on Crane and Swan via the Globus collections (named: `hcc#crane` and `hcc#swan`).  Those who have purchased Attic storage space can
+access their /attic directories via the Globus collection `hcc#attic`. To
+initialize or activate the collection, users will be required to enter
 their HCC username, password, and Duo credentials for authentication.
- The steps involved in activating endpoints and making data transfers
+ The steps involved in activating collections and making data transfers
 are detailed in the following links.  Please contact us at <a href="mailto:hcc-support@unl.edu" class="external-link">hcc-support@unl.edu</a> if you encounter any difficulties.
 
 ---
@@ -52,10 +52,10 @@ are detailed in the following links.  Please contact us at <a href="mailto:hcc-s
 - [Log into Globus](https://app.globus.org) (do this first!)
 
 - [Activating HCC
-Endpoints]({{< relref "activating_hcc_cluster_endpoints" >}})
+Collections]({{< relref "activating_hcc_cluster_endpoints" >}})
 
 - [File Transfers Between
-Endpoints]({{< relref "file_transfers_between_endpoints" >}})
+Collections]({{< relref "file_transfers_between_endpoints" >}})
 
 - [File Transfers to/from Personal
 Workstations]({{< relref "file_transfers_to_and_from_personal_workstations" >}})

content/handling_data/data_transfer/globus_connect/activating_hcc_cluster_endpoints.md

 +++
-title = "Activating HCC Cluster Endpoints"
-description = "How to activate HCC endpoints on Globus"
+title = "Activating HCC Cluster Collections"
+description = "How to activate HCC collections on Globus"
 weight = 20
 +++
 
-You will not be able to transfer files to or from an HCC endpoint using Globus Connect without first activating the endpoint.  Endpoints are available for Crane (`hcc#crane`), Swan, (`hcc#swan`), and Attic (`hcc#attic`).  Follow the instructions below to activate any of these endpoints and begin making transfers.
+You will not be able to transfer files to or from an HCC collection using Globus Connect without first activating the collection.  Collections are available for Crane (`hcc#crane`), Swan, (`hcc#swan`), and Attic (`hcc#attic`).  Follow the instructions below to activate any of these collections and begin making transfers.
 
-1.  [Sign in](https://app.globus.org) to your Globus account using your campus credentials or your Globus ID (if you have one).  Then click on 'Endpoints' in the left sidebar.  
-{{< figure src="/images/Glogin.png" >}}    
-{{< figure src="/images/endpoints.png" >}}
+1.  [Sign in](https://app.globus.org) to your Globus account using your campus credentials or your Globus ID (if you have one).  If you use CILogo to authenticate, you will be redirected to your local campus/facility authentication page (UNL in this example) to enter your campus credentials.  Once you've authenticated, you will be redirected back to your Globus dashboard.
+{{< figure src="/images/globus_login.png" >}}
+Then click on 'Collections' in the left sidebar.  
+{{< figure src="/images/globus_click_collections.png" >}} 
 
-2.  Find the endpoint you want by entering '`hcc#crane`', '`hcc#swan`', or '`hcc#attic`' in the search box and hit 'enter'.  Once you have found and selected the endpoint, click the green 'activate' icon. On the following page, click 'continue'.
-{{< figure src="/images/activateEndpoint.png" >}}
-{{< figure src="/images/EndpointContinue.png" >}}
+
+2.  Find the collection you want by entering '`hcc#crane`', '`hcc#swan`', or '`hcc#attic`' in the search box and hit 'enter'.  Once you have found and selected the collection, click the green 'activate' icon. On the following page, click 'continue'.
+{{< figure src="/images/globus_click_activate_icon.png" >}}
+{{< figure src="/images/globus_click_activate_continue.png" >}}
 
 3.  You will be redirected to the HCC Globus Endpoint Activation page.  Enter your *HCC* username and password (the password you usually use to log into the HCC clusters).
 {{< figure src="/images/hccEndpoint.png" >}}
@@ -23,16 +25,16 @@ You will not be able to transfer files to or from an HCC endpoint using Globus C
     the activation will be complete.  If you use a Yubikey for
     authentication, select the 'Passcode' option and then press your
     Yubikey to complete the activation. Upon successful activation, you
-    will be redirected to your Globus *Manage Endpoints* page.  
+    will be redirected to your Globus *File Manager* page.  
 {{< figure src="/images/EndpointPush.png" >}}
-{{< figure src="/images/endpointComplete.png" >}}
+{{< figure src="/images/globus_collection_activated.png" >}}
 
-The endpoint should now be ready
+The collection should now be ready
 and will not have to be activated again for the next 7 days.  
 To transfer files between any two HCC clusters, you will need to
-activate both endpoints individually. 
+activate both collections individually. 
 
-Next, learn how to [make file transfers between HCC endpoints]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_between_endpoints" >}}) or how to [transfer between HCC endpoints and a personal computer]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_to_and_from_personal_workstations" >}}).
+Next, learn how to [make file transfers between HCC collections]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_between_endpoints" >}}) or how to [transfer between HCC collections and a personal computer]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_to_and_from_personal_workstations" >}}).
 
 ---
 

content/handling_data/data_transfer/globus_connect/creating_globus_groups.md

@@ -5,7 +5,7 @@ weight = 60
 +++
 
 A Globus Connect group is simply a group of individual Globus users.
- Groups are useful when you want to create a shared endpoint and give
+ Groups are useful when you want to create a shared collection and give
 the same permissions to several different users.  To create a group, you
 simply choose a group name and invite whomever you want to join.  You
 will have complete control over the group enrollment as well as the role
@@ -13,24 +13,24 @@ and status of each member.
 
 1.   To get started, select the 'Groups' tab from the left sidebar of your Globus
     home page.  Click on 'Create New Group' in the top right corner of the page.   
-{{< figure src="/images/newGroup.png" >}}      
+{{< figure src="/images/globus_new_group.png" >}}      
 
 2.  Once you have entered a unique group name and description, click
     'Create Group'.  
-{{< figure src="/images/createGroup.png" >}}      
+{{< figure src="/images/globus_create_group.png" >}}      
       
 3.  To invite Globus users to join the group, select the 'Groups' tab on the left-hand side of the page.
 	Then select the group name, and then 'Invite Others'.  
-{{< figure src="/images/InviteOthers.png" >}}      
+{{< figure src="/images/globus_invite_others.png" >}}      
       
 4.  You will be able to enter the invitee's email address directly,
 	or search for them using their Globus user name.  Once you have entered or selected
     the user, click the 'Send Invitation' button.  
-{{< figure src="/images/sendInvitation.png" >}}      
+{{< figure src="/images/globus_send_invitation.png" >}}      
       
 5.  You can check the status of members by selecting the 'group' tab from your homepage,
 	selecting the group, and then selecting the 'members' tab
-{{< figure src="/images/members.png" >}}
+{{< figure src="/images/globus_group_members.png" >}}
       
 ---
 

content/handling_data/data_transfer/globus_connect/file_sharing.md

@@ -5,7 +5,7 @@ weight = 50
 +++
 
 If you would like another colleague or researcher to have access to your
-data, you may create a shared endpoint on Crane, Swan, or Attic. You can personally manage access to this endpoint and
+data, you may create a shared collection on Crane, Swan, or Attic. You can personally manage access to this collection and
 give access to anybody with a Globus account (whether or not
 they have an HCC account).  *Please use this feature responsibly by
 sharing only what is necessary and granting access only to trusted
@@ -17,35 +17,35 @@ creating shares in your `home` directory.
 {{% /notice %}}
 
 1.  Sign in to your Globus account, click on the 'File Manager' tab
-    and search for the endpoint that you will use to host your shared
-    endpoint.  For example, if you would like to share data in your
-    Crane `work` directory, search for the `hcc#crane` endpoint.  Once
-    you have found the endpoint, it will need to be activated if it has
-    not been already (see [endpoint activation instructions
+    and search for the collection that you will use to host your shared
+    collection.  For example, if you would like to share data in your
+    Crane `work` directory, search for the `hcc#crane` collection.  Once
+    you have found the collection, it will need to be activated if it has
+    not been already (see [collection activation instructions
     here]({{< relref "activating_hcc_cluster_endpoints" >}})).
-     If it is already activated, select the endpoint by clicking on the
+     If it is already activated, select the collection by clicking on the
     name.  Then select the 'share' button on the right sidebar.
-{{< figure src="/images/sharedEndpoint.png" >}}
-{{< figure src="/images/shareButton.png" >}}
+{{< figure src="/images/globus_share_select.png" >}}
+{{< figure src="/images/globus_share_share.png" >}}
       
 2.  Click on 'Add a Guest Collection'.  In the 'Path' box, enter the full path to the directory you
     would like to share.  Only files under this directory will be shared
-    to the endpoint users you grant access.  Enter a descriptive endpoint
-    name and provide a
-    short description of the endpoint if you wish.  Finally, click 'Create Share'.
-{{< figure src="/images/createShare.png" >}}
+    to the users you grant access.  Enter a name for the collection and provide a
+    short description if you wish.  Finally, click 'Create Share'.
+{{< figure src="/images/globus_create_share.png" >}}
       
-3.  To share the endpoint with someone, click on 'Add Permissions -- Share With'.  Next enter the *relative path* of the
+3.  To share the collection with someone, click on 'Add Permissions -- Share With' under the 'Permissions' tab for the shared collection you just created.  Next enter the *relative path* of the
     directory that this user should be able to access.  For example, if
-    the source path of your shared endpoint
-    is `/work/<groupid>/<userid>/share` but you would like your
+    the source path of your shared collection
+    is `/work/<groupid>/<userid>` but you would like your
     colleague to only have access
-    to `/work/<groupid>/<userid>/share/dataX`, then the 'Path' should be
-    entered as simply `/dataX`.  Under 'Username or Email' type the Globus ID (or group name if you have selected 'group') of the user (or group) to whom you would like to grant
+    to `/work/<groupid>/<userid>/share`, then the 'Path' should be
+    entered as simply `/share`.  Under 'Username or Email' type the Globus ID (or group name if you have selected 'group') of the user (or group) to whom you would like to grant
     access.  Finally, click the blue 'Add Permission' button.
      You should see the user or group added to the list.
-{{< figure src="/images/addPermission.png" >}}
-{{< figure src="/images/sharedGroup.png" >}}
+{{< figure src="/images/globus_share_with.png" >}}
+{{< figure src="/images/globus_add_permission.png" >}}
+{{< figure src="/images/globus_permission_added.png" >}}
       
 
 ---

content/handling_data/data_transfer/globus_connect/file_transfers_between_endpoints.md

 +++
-title = "File Transfers Between Endpoints"
+title = "File Transfers Between Collections"
 description = "How to transfer files between HCC clusters using Globus"
 weight = 30
 +++
 
 To transfer files between HCC clusters, you will first need to
 [activate]({{< relref "/handling_data/data_transfer/globus_connect/activating_hcc_cluster_endpoints" >}}) the
-two endpoints you would like to use (the available endpoints
+two collections you would like to use (the available collections
 are: `hcc#crane` `hcc#swan`, and `hcc#attic`).  Once
 that has been completed, follow the steps below to begin transferring
-files.  (Note: You can also transfer files between an HCC endpoint and
-any other Globus endpoint for which you have authorized access.  That
+files.  (Note: You can also transfer files between an HCC collection and
+any other Globus collection for which you have authorized access.  That
 may include a [personal
-endpoint]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_to_and_from_personal_workstations" >}}),
+collection]({{< relref "/handling_data/data_transfer/globus_connect/file_transfers_to_and_from_personal_workstations" >}}),
 a [shared
-endpoint]({{< relref "/handling_data/data_transfer/globus_connect/file_sharing" >}}),
-or an endpoint on another computing resource or cluster.  Once the
-endpoints have been activated, the file transfer process is generally
-the same regardless of the type of endpoints you use.  For demonstration
-purposes we use two HCC endpoints.)
+collection]({{< relref "/handling_data/data_transfer/globus_connect/file_sharing" >}}),
+or a collection on another computing resource or cluster.  Once the
+collections have been activated, the file transfer process is generally
+the same regardless of the type of collections you use.  For demonstration
+purposes we use two HCC collections.)
 
-1.  Once both endpoints for the desired file transfer have been
+1.  Once both collections for the desired file transfer have been
     activated, [sign in](https://app.globus.org) to
-    your Globus account (if you are not already) and select
-	"Transfer or Sync to.." from the right sidebar. If you have
+    your Globus account (if you are not already) and select the *File Manager* tab from the left sidebar, and then select *Transfer or Sync to...* from the right sidebar. If you have
 	a small screen, you may have to click the menu icon 
 	first.
-{{< figure src="/images/Transfer.png">}}
+{{< figure src="/images/globus_select_transfer.png">}}
       
-2.  Enter the names of the two endpoints you would like to use, or
-    select from the drop-down menus (for
-    example, `hcc#attic` and `hcc#crane`).  Enter the
+2.  In the two "Collection" text boxes, enter the names of the two collections you would like to use (for example, `hcc#attic` and `hcc#crane`).  Alternatively, you can select from one of your recently used, bookmarked, owned, or shared collections that are pulled up when you click on the text box to enter your search.  Enter the
     directory paths for both the source and destination (the 'from' and
-    'to' paths on the respective endpoints). Press 'Enter' to view files
+    'to' paths on the respective collections). Press 'Enter' to view files
     under these directories.  Select the files or directories you would
     like to transfer (press *shift* or *control* to make multiple
     selections) and click the blue highlighted arrow to start the
     transfer.  
-{{< figure src="/images/startTransfer.png" >}}
+{{< figure src="/images/globus_start_transfer.png" >}}
     
-3.  Globus will display a message when your transfer has completed 
-	(or in the unlikely event that it was unsuccessful), and you will 
-	also receive an email. Select the 'refresh' icon to see your file
-	in the destination folder.
-{{< figure src="/images/transferComplete.png" >}}      
+3.  Globus will display a message that your transfer was submitted successfully, and you can click on "View details" in this message to see the status of the transfer.  You will also receive an email when the transfer has completed (this is especially helpful in the case of large, long-duration transfers).  Finally, to see your newly transferred file(s) in the destination folder, select the "refresh list" icon for that collection.
+
+{{< figure src="/images/globus_refresh_list.png" >}}      
 
 --- 
 

content/handling_data/data_transfer/globus_connect/file_transfers_to_and_from_personal_workstations.md

@@ -7,31 +7,31 @@ weight = 40
 *Globus Connect Personal* allows you to transfer files to and from your
 personal computer.  Once this software is installed, file transfers are
 simple and proceed in much the same way as transfers between HCC
-endpoints.
+collections.
 
 1.  Install [Globus Connect Personal](https://www.globus.org/globus-connect-personal) on your computer.  Follow the
     detailed instructions for your operating system provided in the
     links below:
-	- [Mac](https://docs.globus.org/how-to/globus-connect-personal-mac/) (Intel - OS X 10.4 or higher)
+	- [Mac](https://docs.globus.org/how-to/globus-connect-personal-mac/) (Intel - OS X 10.9 or higher)
 	- [Linux](https://docs.globus.org/how-to/globus-connect-personal-linux/) (x86-based)
 	- [Windows](https://docs.globus.org/how-to/globus-connect-personal-windows/) (7, 8, and 10)
 
 2.  Once Globus Connect Personal
-    has been successfully installed, your personal endpoint will show up
-    in the 'Administered by You' section of the 'Endpoints' tab of
-    your Globus home page.  This endpoint is private by default, and
+    has been successfully installed, your personal collection will show up
+    in the 'Administered by You' section of the 'Collections' tab of
+    your Globus home page.  This collection is private by default, and
     therefore not visible or accessible to other Globus users.  
-{{< figure src="/images/endpointAdmin.png" >}}
+{{< figure src="/images/globus_personal_collection.png" >}}
     
 3.  Make transfers to and from
-    your personal endpoint just as you would from a public endpoint.
+    your personal collection just as you would from a public collection.
      From your Globus account, select the 'File Manager' tab 
-	from the left sidebar and enter the name of your new endpoint the 'Collection' text box. Press 'Enter' and then
+	from the left sidebar and enter the name of your new collection in the 'Collection' text box. Press 'Enter' and then
     navigate to the appropriate directory. Select "Transfer of Sync to.." from the right sidebar (or select the "two panels"
-	icon from the top right corner) and Enter the second endpoint (for example: `hcc#crane`, `hcc#swan`, or `hcc#attic`),
+	icon from the top right corner) and Enter the second collection (for example: `hcc#crane`, `hcc#swan`, or `hcc#attic`),
 	type or navigate to the desired directory, and initiate the file transfer by clicking on the blue
     arrow button.
-{{< figure src="/images/PersonalTransfer.png" >}}  
+{{< figure src="/images/globus_personal_transfer.png" >}}  
 
 ------------------------------------------------------------------------
 

content/handling_data/data_transfer/globus_connect/globus_command_line_interface.md

@@ -10,6 +10,10 @@ interactively. The CLI allows users to transfer files and manipulate
 directory structures on a remote endpoint without use of the web
 interface.
 
+{{% notice info %}}
+Here, the term "Endpoint" is used instead of "Collection", but in this context they are interchangable.  Although Globus has switched to using the term "collection" on the transfer portal, the cli described here still uses "endpoint".
+{{% /notice %}}
+
 ---
 ### Connecting to Globus on the Command Line