Commit a91cb360 authored by joshcarini's avatar joshcarini
Browse files

Merge branch 'master' of https://git.unl.edu/hcc/hcc-docs

parents dd2dc924 34cb6512
......@@ -3,12 +3,10 @@ title = "Nebraska Supercomputing Symposium '12"
description = "Nebraska Supercomputing Symposium '12."
+++
<img src="/images/2012-11-07.jpg?effects=drop-shadow" class="confluence-embedded-image confluence-thumbnail" width="300" />
<img src="/images/2012-11-07.jpg?effects=drop-shadow" width="300" />
<img src="/images/2012-11-07hdr.jpg?effects=drop-shadow" width="300" />
<img src="/images/2012-11-07hdr.jpg?effects=drop-shadow" class="confluence-embedded-image confluence-thumbnail" width="300" />
<img src="/images/PIVOT_Logo.png" class="confluence-embedded-image confluence-thumbnail" width="100" >Talks
<img src="/images/PIVOT_Logo.png" width="100" /> Talks
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
- [Intro slides](https://unl.box.com/s/4gctct2jgu2e78y7efld7w39xzbd1j4d)
......
......@@ -3,15 +3,12 @@ title = "Supercomputing Mini Workshop 2012"
description = "Supercomputing Mini Workshop 2012."
+++
Quick Link: <a href="http://go.unl.edu/supercomputing_mini_2012">http://go.unl.edu/supercomputing_mini_2012</a>
Presentation
============
[Workshop Presentation](https://unl.box.com/s/qr0p96va5qrkhvvq8lcyvqnzfrz1q2c0)
Materials
=========
Submit files, code source files, and example scripts can be found in
the [workshop materials](https://unl.box.com/s/2wbxw9wxom6lgtqlx7kufaq0sqoluht5).
\ No newline at end of file
the [workshop materials](https://unl.box.com/s/2wbxw9wxom6lgtqlx7kufaq0sqoluht5).
+++
title = "HCC Supercomputing Symposium 2013"
description = "HCC Supercomputing Symposium 2013"
+++
<strong>Location: Wick Alumni Center, Dana Board Room</strong><br>
The morning sessions will be interactive – attendees should bring a laptop if at all possible! The first sessions will be primarily planned tutorial format, while the “Open Lab” will involve more individualized help of those in attendance as desired.
| Time | Title | Description |
|---------|-------------------------------------------------------|------------------------------------------------------------------|
| 9 - 10am| Getting started at HCC | HCC 101 (Linux Primer, Job submission) [Quick Start Guides](https://hcc.unl.edu/docs/quickstarts/) |
| 10 - 11am | Job management | Creating and deploying parallel jobs at HCC, OSG [Submitting Jobs](https://hcc.unl.edu/docs/guides/submitting_jobs/) |
| 11 - 11:45am | HCC Open Lab | Presentations and help from HCC staff |
| 12 - 1pm | LUNCH lecture with UNIT | Carl Lundstedt: How Big Data Allows Us to Investigate the Smallest Things |
|1:15 – 2pm | New User Spotlight – Steve Kolbe, Theatre | Media Arts Film Rendering @ HCC |
| 2 - 3pm | State of HCC; Crane Announcement | David Swanson |
1. <span style="line-height: 1.4285715;">Getting Started at HCC (9-10am</span>
1. [Getting an account at HCC](https://hcc.unl.edu/new-user-request)
2. Logging into HCC resources for [windows](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) or [Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/)
3. Basic Linux commands
4. [Transferring files to HCC](https://hcc.unl.edu/docs/guides/handling_data/)
2. Job Management (10-11am)
1. [End to End MPI](https://hcc.unl.edu/docs/guides/running_applications/mpi_jobs_on_hcc/) example. Including how to transfer source code and compile an MPI application on Tusker.
2. [Compiling](https://hcc.unl.edu/docs/guides/running_applications/compiling_source_code/compiling_an_openmp_application/) and [submitting](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_an_openmp_job/) multi-thread and OpenMP applications.
3. Using scheduler features such as [Arrays](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_a_job_array/
) and [Dependencies](https://hcc.unl.edu/docs/guides/submitting_jobs/job_dependencies/
).
4. Debugging on Tusker by using [interactive submission](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_an_interactive_job/).
<span style="line-height: 1.4285715;">&lt;lunch&gt;</span>
......@@ -3,18 +3,11 @@ title = "HCC Condor Workshop 2013"
description = "HCC Condor Workshop 2013."
+++
Quick
link: <a href="http://go.unl.edu/hcc_condor_2013" class="external-link">http://go.unl.edu/hcc_condor_2013</a>
<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Click here to view presentation...</span>
Presentation
Condor
============
Workshop presentation slides
&lt;[condor\_workshop.pdf](attachments/2851573/3178564.pdf)&gt;
&lt;[condor\_workshop.pdf](https://unl.box.com/s/ou8tf62bqkbrh7yx0cl4me1zbp3z0j08)&gt;
| Time | Title | Description |
|---------|-------------------------|------------------------------------------------|
......@@ -24,30 +17,19 @@ Workshop presentation slides
Password for all demo accounts is **HCC\_condor2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows
Users](For-Windows-Users_2851288.html) or [For Mac/Linux
Users](2851290.html).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
- Sample code for Fortran/C on HCC:
&lt;[serial\_dir.zip](attachments/2851569/3178562.zip)&gt;
&lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt;
- Sample code for Condor on HCC:
&lt;[condor\_dir.zip](attachments/2851573/3178565.zip)&gt;
&lt;[condor\_dir.zip](https://unl.box.com/s/qpvgnqr9ukjcmt0d2trde4qcp5e5ez17)&gt;
- For more details of this demonstration, see [Condor Jobs on
HCC](Condor-Jobs-on-HCC_2851447.html).
 
<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Click here to view presentation...</span>
Error rendering macro 'viewpdf' : The viewfile macro is unable to locate
the attachment "matlab\_workshop.pdf" on this page
HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/condor_jobs_on_hcc/).
Presentation
MATLAB
============
Workshop presentation slides
&lt;[matlab\_workshop.pdf](attachments/2851357/3178542.pdf)&gt;
&lt;[matlab\_workshop.pdf](https://unl.box.com/s/ou8tf62bqkbrh7yx0cl4me1zbp3z0j08)&gt;
| Time | Title | Description |
|---------|-------------------------|---------------------------------------------------|
......@@ -57,23 +39,12 @@ Workshop presentation slides
Password for all demo accounts is **HCC\_matlab2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows
Users](For-Windows-Users_2851288.html) or [For Mac/Linux
Users](2851290.html).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
- Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/)
- Sample code for MATLAB on HCC:
&lt;[matlab\_dir.zip](attachments/2851357/3178543.zip)&gt;
&lt;[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)&gt;
- Sample code for Parallel MATLAB Job:
&lt;[parallel\_matlab\_dir.zip](attachments/2851357/3178544.zip)&gt;
- For more details of this demonstration, see [MATLAB on
HCC](MATLAB-on-HCC_2851078.html).
Attachments:
------------
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[condor\_workshop.pdf](attachments/2851573/3178564.pdf)
(application/pdf)
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[condor\_dir.zip](attachments/2851573/3178565.zip) (application/zip)
&lt;[parallel\_matlab\_dir.zip](https://unl.box.com/s/fhl3kf6hg8dmtozkphq3u2r58yexrppe)&gt;
......@@ -3,7 +3,7 @@ title = "HCC MPI Workshop 2013"
description = "HCC MPI Workshop 2013."
+++
Workshop presentation slides &lt;[mpi\_workshop.pdf](https://unl.app.box.com/file/438884023344)&gt;
Workshop presentation slides &lt;[mpi\_workshop.pdf](https://unl.box.com/s/7rufq2a39n2vektg19ko9fjcbios4kqp)&gt;
| Time | Title | Description |
|---------|-------------------------|------------------------------------------------|
......@@ -13,13 +13,12 @@ Workshop presentation slides &lt;[mpi\_workshop.pdf](https://unl.app.box.com/fil
Password for all demo accounts is **HCC\_mpi2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) or [For Mac/Linux
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
- Sample code for Fortran/C on HCC:
&lt;[serial\_dir.zip](https://unl.app.box.com/file/438858401843)&gt;
&lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt;
- Sample code for MPI on HCC:
&lt;[mpi\_dir.zip](https://unl.app.box.com/file/438885605405)&gt;
&lt;[mpi\_dir.zip](https://unl.box.com/s/fekjdxx82gxp3x75nbsrqmrri52d4zlp)&gt;
- For more details of this demonstration, see [MPI Jobs on
HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_an_mpi_job/).
......
......@@ -7,12 +7,12 @@ Location: Unity Room/212 in the Jackie Gaughan Multicultural Center
| Time | Title | Description |
|---------|-------------------------------------------------------|------------------------------------------------------------------|
| 9am | [Intro to HTC](2850830.html) | Introduction to High Throughput Computing |
| 10:30am | [Practice Blast Job](Practice-Blast-Job_2850818.html) | Run a real science application, Blast, on a Condor based system. |
| 9am | [Intro to HTC](https://unl.box.com/s/tz6q1or6tzm67cm0omq0p958e3ehm46e) | Introduction to High Throughput Computing |
| 10:30am | [Practice Blast Job](https://unl.box.com/s/di0a3l3k2c8bsuaw1opl3s00nywkhivb) | Run a real science application, Blast, on a Condor based system. |
| 12pm | Lunch | Lunch is provided. |
| 1pm | [Workflows](Workflows-in-Condor_2850943.html) | Learn how to describe a workflow in DAG format. |
| 2pm | [Portability](2850906.html) | Transfer input and output files with the jobs |
| 3pm | [Big Data](Using-HTTP_2850974.html) | Learn how to handle large data in HTC |
| 1pm | [Workflows](https://unl.box.com/s/5cicuo56ppuf4purmj7huwr4dud60yvh) | Learn how to describe a workflow in DAG format. |
| 2pm | [Portability](https://unl.box.com/s/xtp61t6bd9vp74hvql0vds9bgsqcup1z) | Transfer input and output files with the jobs |
| 3pm | [Big Data](https://unl.box.com/s/3p240gt045m5fp5n4vwv4kbfv303fxvv) | Learn how to handle large data in HTC |
Password for demo account is 'OSG@HCC2013'.
......@@ -28,20 +28,20 @@ Password for demo account is 'OSG@HCC2013'.
3. Dagman (D)
1. Intro to dagman
2. Multiple queries and
summarize <a href="https://opensciencegrid.org/bin/view/Education/OSGSS2012CondorBLAST" class="external-link">OSG Page</a>
summarize OSG Page
4. Portability (A)
1. Compiling for lowest common denominator
2. Data Requirements
3. Packaging (wrapper scripts?)
4. [Example:  Running R on the OSG](2850906.html)
4. [Example:  Running R on the OSG](https://unl.box.com/s/xtp61t6bd9vp74hvql0vds9bgsqcup1z)
5. Big Data (A)
1. Medium Data 10MB - 500MB - HTTP
2. Large Data 500MB+ - SRM / GridFTP
3. [Example:  Using HTTP](Using-HTTP_2850974.html)
3. [Example:  Using HTTP](https://unl.box.com/s/3p240gt045m5fp5n4vwv4kbfv303fxvv)
 
Materials borrowed
from <a href="https://opensciencegrid.org/bin/view/Education/UserSchool12Materials" class="external-link">OSG</a>.
from <a href=" https://support.opensciencegrid.org/support/home" class="external-link">OSG</a>.
......@@ -6,6 +6,10 @@ description = "Supercomputing Mini Workshop 2013."
Supercomputing Mini Workshop - February 27, 2013
================================================
{{% notice info %}}The materials found on this page were applicable at the time of the event. When referencing these,
please check current documentation to ensure the resources are still available.A list of currently available resources can be found on the
[Submitting Jobs page](https://hcc.unl.edu/docs/#resource-capabilities){{% /notice %}}
In this hour-long mini workshop, you will obtain hands-on experience
performing a simple calculation (summing from 1 to 16) with a
supercomputer, using both serial and parallel computing. No prior
......
......@@ -24,9 +24,8 @@ weight = 20
{{< figure src="/images/jupyterPush.png" >}}
3. Choose a job profile. Select "Local Jupyter Notebook" for light tasks such as debugging or small-scale testing.
Select the other options based on your computing needs. Note that a local Jupyter Notebook will save to your "home"
directory, while the other options save to your "work" directory.
3. Choose a job profile. Select "Noteboook via SLURM Job | Small (1 core, 4GB RAM, 8 hours)" for light tasks such as debugging or small-scale testing.
Select the other options based on your computing needs. Note that a SLURM Job will save to your "work" directory.
{{< figure src="/images/jupyterjob.png" >}}
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