Merge

...nts/2013/supercomputing_mini_workshop_february_27_2013.md

content/accounts/_index.md

...rformance_reports/ray_with_allinea_performance_reports.md

...fic/bioinformatics_tools/alignment_tools/clustal_omega.md

...ific/bioinformatics_tools/de_novo_assembly_tools/oases.md

...ecific/bioinformatics_tools/de_novo_assembly_tools/ray.md

...ioinformatics_tools/de_novo_assembly_tools/soapdenovo2.md

...nformatics_tools/de_novo_assembly_tools/trinity/_index.md

...informatics_tools/de_novo_assembly_tools/velvet/_index.md

...cific/bioinformatics_tools/pre_processing_tools/scythe.md

...cific/bioinformatics_tools/pre_processing_tools/sickle.md

.../app_specific/running_ocean_land_atmosphere_model_olam.md

content/applications/user_software/r_packages.md

content/handling_data/data_storage/_index.md

..._transfer/globus_connect/globus_command_line_interface.md

content/submitting_jobs/app_specific/submitting_r_jobs.md

content/submitting_jobs/submitting_gpu_jobs.md