Merge branch 'update-quickstarts' into 'master'

Update quickstarts

See merge request !11

content/quickstarts/condor_jobs_on_hcc.md

-1.  [HCC-DOCS](index.html)
-2.  [HCC-DOCS Home](HCC-DOCS-Home_327685.html)
-3.  [HCC Documentation](HCC-Documentation_332651.html)
-4.  [Quick Start Guides](Quick-Start-Guides_1245279.html)
++++
+title = "Condor Jobs on HCC"
+description = "How to run jobs using Condor on HCC machines"
+weight = "54"
++++
 
-<span id="title-text"> HCC-DOCS : Condor Jobs on HCC </span>
-============================================================
-
-Created by <span class="author"> Huang Cheng-Wei</span>, last modified
-by <span class="editor"> Adam Caprez</span> on Sep 17, 2013
-
-This quick start demonstrates how to run multiple copies of<span
-style="font-size: 14.0px;line-height: 1.4285715;"> Fortran/C program
+This quick start demonstrates how to run multiple copies of Fortran/C program
 using Condor on HCC supercomputers. The sample codes and submit scripts
-can be downloaded from
-&lt;</span>[condor\_dir.zip](attachments/2851447/3178558.zip)<span
-style="font-size: 14.0px;line-height: 1.4285715;">&gt;. </span>
+can be downloaded from [condor_dir.zip](/attachments/3178558.zip).
 
-Login to Sandhills
-------------------
+#### Login to a HCC Cluster
 
-Log in to Sandhills through PuTTY ([For Windows
-Users](For-Windows-Users_2851288.html)) or Terminal ([For Mac/Linux
-Users](2851290.html)) and make a subdirectory called condor\_dir under
-the `$WORK` directory. In the subdirectory `condor_dir`, create job
-subdirectories that host the input data files. Here we create two job
-subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in
-each subdirectory. The data file in `job_0` has a column of data listing
-the integers from 1 to 5. The data file in `job_1` has a integer list
-from 6 to 10. 
+Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/for_windows_users">}})) or Terminal ([For Mac/Linux Users]({{< relref "/quickstarts/for_maclinux_users">}})) and make a subdirectory called `condor_dir` under the `$WORK` directory.  In the subdirectory `condor_dir`, create job  subdirectories that host the input data files. Here we create two job subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in each subdirectory. The data file in `job_0` has a column of data listing the integers from 1 to 5. The data file in `job_1` has a integer list from 6 to 10. 
 
-``` syntaxhighlighter-pre
+{{< highlight bash >}}
 $ cd $WORK
 $ mkdir condor_dir
 $ cd condor_dir
 $ mkdir job_0
 $ mkdir job_1
-```
+{{< /highlight >}}
 
 In the subdirectory condor`_dir`, save all the relevant codes. Here we
 include two demo programs, `demo_f_condor.f90` and `demo_c_condor.c`,
@@ -53,13 +36,8 @@ stored in the job subdirectory. No additional coding are needed to make
 the serial code turned "parallel". Parallelization here is achieved
 through the submit script. 
 
-**demo\_f\_condor.f90** <span class="collapse-source expand-control"
-style="display:none;"><span
-class="expand-control-icon icon"> </span><span
-class="expand-control-text">Expand source</span></span> <span
-class="collapse-spinner-wrapper"></span>
-
-``` syntaxhighlighter-pre
+{{%expand "demo_condor.f90" %}}
+{{< highlight fortran >}}
 Program demo_f_condor
     implicit none
     integer, parameter :: N = 5
@@ -94,15 +72,12 @@ Subroutine proc(w)
     
 Return
 End Subroutine
-```
+{{< /highlight >}}
+{{% /expand %}}
 
-**demo\_c\_condor.c** <span class="collapse-source expand-control"
-style="display:none;"><span
-class="expand-control-icon icon"> </span><span
-class="expand-control-text">Expand source</span></span> <span
-class="collapse-spinner-wrapper"></span>
 
-``` syntaxhighlighter-pre
+{{%expand "demo_c_condor.c" %}}
+{{< highlight c >}}
 //demo_c_condor
 #include <stdio.h>
 
@@ -141,10 +116,12 @@ int main(int argc, char* argv[]){
     printf("sum(y)= %lf\n", sum);    
 return 0;
 }
-```
+{{< /highlight >}}
+{{% /expand %}}
+
+---
 
-Compiling the Code
-------------------
+#### Compiling the Code
 
 The compiled executable needs to match the "standard" environment of the
 worker node. The easies way is to directly use the compilers installed
@@ -152,24 +129,22 @@ on the HCC supercomputer without loading extra modules. The standard
 compiler of the HCC supercomputer is GNU Compier Collection. The version
 can be looked up by the command lines `gcc -v` or `gfortran -v`.
 
-``` syntaxhighlighter-pre
+
+{{< highlight bash >}}
 $ gfortran demo_f_condor.f90 -o demo_f_condor.x
 $ gcc demo_c_condor.c -o demo_c_condor.x
-```
+{{< /highlight >}}
 
-<span style="color: rgb(0,0,0);">Creating a Submit Script</span>
-----------------------------------------------------------------
+#### Creating a Submit Script
 
 Create a submit script to request 2 jobs (queue). The name of the job
 subdirectories is specified in the line `initialdir`. The
 `$(process)` macro assigns integer numbers to the job subdirectory
-name `job_`. The numbers run form 0 to <span
-style="font-family: monospace;">queue-1</span>. The name of the input
+name `job_`. The numbers run form `0` to `queue-1`. The name of the input
 data file is specified in the line `transfer_input_files`.
 
-**submit\_f.condor**
-
-``` syntaxhighlighter-pre
+{{% panel header="`submit_f.condor`"%}}
+{{< highlight bash >}}
 universe = grid
 grid_resource = pbs
 batch_queue = guest
@@ -181,11 +156,11 @@ error = Fortran_$(process).err
 initialdir = job_$(process)
 transfer_input_files = data.dat
 queue 2
-```
-
-**submit\_c.condor**
+{{< /highlight >}}
+{{% /panel %}}
 
-``` syntaxhighlighter-pre
+{{% panel header="`submit_c.condor`"%}}
+{{< highlight bash >}}
 universe = grid
 grid_resource = pbs
 batch_queue = guest
@@ -197,20 +172,22 @@ error = C_$(process).err
 initialdir = job_$(process)
 transfer_input_files = data.dat
 queue 2
-```
+{{< /highlight >}}
+{{% /panel %}}
 
-Submit the Job
---------------
+#### Submit the Job
 
 The job can be submitted through the command `condor_submit`. The job
 status can be monitored by entering `condor_q` followed by the
 username. 
 
-``` syntaxhighlighter-pre
+{{< highlight bash >}}
 $ condor_submit submit_f.condor
 $ condor_submit submit_c.condor
 $ condor_q <username>
-```
+{{< /highlight >}}
+
+Replace `<username>` with your HCC username.
 
 Sample Output
 -------------
@@ -219,46 +196,24 @@ In the job subdirectory `job_0`, the sum from 1 to 5 is computed and
 printed to the `.out` file. In the job subdirectory `job_1`, the sum
 from 6 to 10 is computed and printed to the `.out` file. 
 
-**Fortran\_0.out** <span class="collapse-source expand-control"
-style="display:none;"><span
-class="expand-control-icon icon"> </span><span
-class="expand-control-text">Expand source</span></span> <span
-class="collapse-spinner-wrapper"></span>
-
-``` syntaxhighlighter-pre
+{{%expand "Fortran_0.out" %}}
+{{< highlight batchfile>}}
  i,x =            1   1.0000000000000000     
  i,x =            2   2.0000000000000000     
  i,x =            3   3.0000000000000000     
  i,x =            4   4.0000000000000000     
  i,x =            5   5.0000000000000000     
  sum(y) =   15.000000000000000     
-```
+{{< /highlight >}}
+{{% /expand %}}
 
-**Fortran\_1.out** <span class="collapse-source expand-control"
-style="display:none;"><span
-class="expand-control-icon icon"> </span><span
-class="expand-control-text">Expand source</span></span> <span
-class="collapse-spinner-wrapper"></span>
-
-``` syntaxhighlighter-pre
+{{%expand "Fortran_1.out" %}}
+{{< highlight batchfile>}}
  i,x =            1   6.0000000000000000     
  i,x =            2   7.0000000000000000     
  i,x =            3   8.0000000000000000     
  i,x =            4   9.0000000000000000     
  i,x =            5   10.000000000000000     
  sum(y) =   40.000000000000000     
-```
-
-Attachments:
-------------
-
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[condor\_dir.zip](attachments/2851447/3178559.zip) (application/zip)  
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[condor\_dir.zip](attachments/2851447/3178560.zip) (application/zip)  
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[condor\_dir.zip](attachments/2851447/3178558.zip) (application/zip)  
-
-Document generated by Confluence on Oct 24, 2018 14:47
-
-[Atlassian](http://www.atlassian.com/)
+{{< /highlight >}}
+{{% /expand %}}