Merge branch 'atlassian_nuke' into 'master'

...cs_tools/removing_detecting_redundant_sequences/cd_hit.md

...s/running_applications/compiling_an_openmp_application.md

content/guides/running_applications/compiling_source_code.md

content/guides/running_applications/dmtcp_checkpointing.md

...nt/guides/running_applications/installing_perl_modules.md

content/guides/running_applications/module_commands.md

...nt/guides/running_applications/running_gaussian_at_hcc.md

..._applications/running_ocean_land_atmosphere_model_olam.md

content/guides/running_applications/running_theano.md

...es/running_applications/using_anaconda_package_manager.md

content/guides/running_applications/using_singularity.md

content/guides/submitting_jobs/_index.md

...bmitting_jobs/available_partitions_on_crane_and_tusker.md

...ides/submitting_jobs/available_partitions_on_sandhills.md

content/guides/submitting_jobs/hcc_acknowledgment_credit.md

content/guides/submitting_jobs/job_dependencies.md

content/guides/submitting_jobs/monitoring_jobs.md

content/guides/submitting_jobs/submitting_a_job_array.md

...t/guides/submitting_jobs/submitting_an_interactive_job.md

content/guides/submitting_jobs/submitting_an_mpi_job.md