add bioinformatics pages part 2

...pplications/bioinformatics_tools/biodata_module/_index.md

...tions/bioinformatics_tools/pre_processing_tools/_index.md

...ons/bioinformatics_tools/pre_processing_tools/cutadapt.md

...ions/bioinformatics_tools/pre_processing_tools/prinseq.md

...tions/bioinformatics_tools/pre_processing_tools/scythe.md

...tions/bioinformatics_tools/pre_processing_tools/sickle.md

...s/bioinformatics_tools/pre_processing_tools/tagcleaner.md

...guides/running_applications/bioinformatics_tools/qiime.md

...nformatics_tools/reference_based_assembly_tools/_index.md

...rmatics_tools/reference_based_assembly_tools/cufflinks.md

...cs_tools/removing_detecting_redundant_sequences/_index.md

...tics_tools/removing_detecting_redundant_sequences/cap3.md

...cs_tools/removing_detecting_redundant_sequences/cd_hit.md

static/html/cap3.html

static/html/scythe.html

static/html/sickle.html