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Add bioinformatics pages part 2

Merged Natasha Pavlovikj requested to merge bioinformatics-part2 into master
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@@ -46,6 +46,7 @@ An example of how to run Bowtie2 local alignment on Crane utilizing the default
@@ -46,6 +46,7 @@ An example of how to run Bowtie2 local alignment on Crane utilizing the default
module load bowtie/2.2
module load bowtie/2.2
module load biodata
module load biodata
 
bowtie2 -x $BOWTIE2_HORSE -f -1 input_reads_pair_1.fasta -2 input_reads_pair_2.fasta -S bowtie2_alignments.sam --local -p $SLURM_NTASKS_PER_NODE
bowtie2 -x $BOWTIE2_HORSE -f -1 input_reads_pair_1.fasta -2 input_reads_pair_2.fasta -S bowtie2_alignments.sam --local -p $SLURM_NTASKS_PER_NODE
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@@ -76,4 +77,3 @@ cp /scratch/blast_nucleotide.results .
@@ -76,4 +77,3 @@ cp /scratch/blast_nucleotide.results .
The organisms and their appropriate environmental variables for all genomes and chromosome files, as well as for short read aligned indices are shown on the link below:
The organisms and their appropriate environmental variables for all genomes and chromosome files, as well as for short read aligned indices are shown on the link below:
[Organisms](#organisms)
[Organisms](#organisms)
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