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More modifications to the OOD apps page

Merged Mohammed Tanash requested to merge ood-software into master
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@@ -7,8 +7,9 @@ weight=50
@@ -7,8 +7,9 @@ weight=50
### Currently Available Open OnDemand Applications
### Currently Available Open OnDemand Applications
Holland Computing Center (HCC) offers the following applications with the HCC OnDemand:
Holland Computing Center (HCC) offers the following applications with the HCC OnDemand:
- Virtual Desktop
- 3D Slicer
- COMSOL Multiphysics
- COMSOL Multiphysics
 
- Code Server
- CryoSPARC
- CryoSPARC
- DSI-Studio
- DSI-Studio
- FSL
- FSL
@@ -16,21 +17,26 @@ Holland Computing Center (HCC) offers the following applications with the HCC On
@@ -16,21 +17,26 @@ Holland Computing Center (HCC) offers the following applications with the HCC On
- FreeSurfer
- FreeSurfer
- Gate
- Gate
- IGV
- IGV
 
- Jupyter Lab
- MATLAB
- MATLAB
- Mathematica
- Mathematica
- ParaView
- ParaView
- PyMOL
- PyMOL
- QGIS
- QGIS
- RELION
- RELION
- SimVascular
- XNAT Desktop Client
- Code Server
- Jupyter Lab
- RStudio Server
- RStudio Server
 
- Schrodinger
 
- SimVascular
- TensorBoard
- TensorBoard
 
- Virtual Desktop
 
- XNAT Desktop Client
 
 
{{% notice note %}}
 
Applications such as COMSOL, CryoSPARC and Schrodinger require valid license, so please make sure you have access to the license or are part of the proper HCC group in order to access these applications.
 
{{% /notice %}}
{{% notice info %}}
{{% notice info %}}
If you would like to request to add a new or different GUI Application, then please email us at {{< icon name="envelope" >}}[hcc-support@unl.edu](mailto:hcc-support@unl.edu)
If you would like to request new Linux-based GUI Application to be added to Swan Open OnDemand, please email {{< icon name="envelope" >}}[hcc-support@unl.edu](mailto:hcc-support@unl.edu) with your request.
{{% /notice %}}
{{% /notice %}}
@@ -50,8 +56,6 @@ If you've launched a virtual desktop, click "Launch Desktop" once the job begins
@@ -50,8 +56,6 @@ If you've launched a virtual desktop, click "Launch Desktop" once the job begins
If you've launched an interactive app, click "Connect to APP", replacing "APP" with the app you are starting, once the job begins running. This will create a new tab in your browser window, and from here you will be able to interact with the application from within your web browser.
If you've launched an interactive app, click "Connect to APP", replacing "APP" with the app you are starting, once the job begins running. This will create a new tab in your browser window, and from here you will be able to interact with the application from within your web browser.
{{< figure src="/images/OOD_Jupyter_1.png" width="700" class="img-border">}}
Be sure to delete desktop and any other interactive jobs once you are finished with them by selecting the "My Interactive Sessions" button on the OnDemand menu bar and then clicking the red "Delete" button next to the job.
Be sure to delete desktop and any other interactive jobs once you are finished with them by selecting the "My Interactive Sessions" button on the OnDemand menu bar and then clicking the red "Delete" button next to the job.
{{< figure src="/images/OOD_Delete_desktop_1.png" width="700" class="img-border">}}
{{< figure src="/images/OOD_Delete_desktop_1.png" width="700" class="img-border">}}
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