Added pre-fab files for de-novo gene assembly and expression.

pre/transcriptome.fa

pre/transcriptome.gff

pre/trinity_out_dir/.iworm.ok

pre/trinity_out_dir/.iworm_renamed.ok

pre/trinity_out_dir/.jellyfish_count.ok

pre/trinity_out_dir/.jellyfish_dump.ok

pre/trinity_out_dir/.jellyfish_histo.ok

pre/trinity_out_dir/Trinity.fasta

pre/trinity_out_dir/Trinity.fasta.gene_trans_map

pre/trinity_out_dir/Trinity.timing

pre/trinity_out_dir/inchworm.K25.L25.fa

pre/trinity_out_dir/inchworm.K25.L25.fa.finished

pre/trinity_out_dir/inchworm.kmer_count

pre/trinity_out_dir/jellyfish.kmers.fa.histo

pre/trinity_out_dir/partitioned_reads.files.list

pre/trinity_out_dir/partitioned_reads.files.list.ok

pre/trinity_out_dir/pipeliner.100849.cmds

pre/trinity_out_dir/recursive_trinity.cmds

pre/trinity_out_dir/recursive_trinity.cmds.completed

pre/trinity_out_dir/recursive_trinity.cmds.ok