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Commit 1e305560 authored by James Schnable's avatar James Schnable
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......@@ -126,11 +126,12 @@
\begin{itemize}
\item University of Nebraska-Lincoln
\\Professor, Department of Agronomy and Horticulture\hfill 2022-Present
\\Charles O. Gardner Professor of Agronomy \hfill 2019-Present
\\Nebraska Corn Checkoff Presidential Chair \hfill 2023-Present
\\Charles O. Gardner Professor of Agronomy \hfill 2019-2023
\\Associate Professor, Department of Agronomy and Horticulture \hfill 2019-2022
\\Assistant Professor, Department of Agronomy and Horticulture \hfill 2014-2019
\item Alphabet, Google, X\\
Technology Lead \textit{(Interim)} \hfill 2022
\item X, Google, Alphabet\\
\textit{(Interim)} Technology Lead (L7) \hfill 2022
\item Danforth Plant Science Center \& Chinese Academy of Agricultural Sciences\\
NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014
%\item Donald Danforth Plant Science Center\\
......@@ -298,7 +299,7 @@ Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering)
\section*{Publications}
\begin{center}
\textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{43}} \\
\textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{44}} \\
Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$undergraduate author, $^\S$corresponding author
\end{center}
......@@ -307,6 +308,8 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\addtolength{\leftskip}{9mm}
\subsection*{Preprints}
\noindent \textbf{Torres-Rodriguez JV}, Li D, \textbf{Turkus J}, Newton L, \textbf{Davis J}, \textbf{Lopez-Corona L}, \textbf{Ali W}, \textbf{Sun G}, \textbf{Mural RV}, \textbf{Grzybowski M}, Thompson AM, \textbf{Schnable JC}$^\S$ Population level gene expression can repeatedly link genes to functions in maize. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2023.10.31.565032}{10.1101/2023.10.31.565032}\\
\noindent Sahay S, \textbf{Shrestha N}, \textbf{Moura Dias H}, \textbf{Mural RV}, \textbf{Grzybowski M}, \textbf{Schnable JC}$^\S$, Glowacka K$^\S$ Comparative GWAS identifies a role for Mendel’s green pea gene in the nonphotochemical quenching kinetics of sorghum, maize, and arabidopsis. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2023.08.29.555201}{10.1101/2023.08.29.555201}\\
\noindent Engelhorn J, Snodgrass S, Kok A, Seetharam A, Schneider M, Kiwit T, Singh A, Banf M, Khaipho-Burch M, Runcie D, Camargo V, \textbf{Torres-Rodriguez JV}, \textbf{Sun G}, Stam M, Fiorani F, \textbf{Schnable JC}, Bass H, Hufford M, Stich B, Frommer W, Ross-Ibarra J, Hartwig T$^\S$ Phenotypic variation in maize can be largely explained by genetic variation at transcription factor binding sites. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2023.08.08.551183}{10.1101/2023.08.08.551183}\\
......@@ -334,9 +337,9 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\begin{etaremune}
\subsection*{Faculty Publications}
\item DiMario R, Kophs A, Apalla A, \textbf{Schnable JS}, Cousins A (2023) Multiple highly expressed phosphoenolpyruvate carboxylase genes have divergent enzyme kinetic properties in two C4 grasses. \textsc{Annals Of Botany} \textit{(In Press)}
\item DiMario R, Kophs A, Apalla A, \textbf{Schnable JS}, Cousins A$^\S$ (2023) Multiple highly expressed phosphoenolpyruvate carboxylase genes have divergent enzyme kinetic properties in two C\textsubscript{4} grasses. \textsc{Annals Of Botany} doi: \href{https://doi.org/10.1093/aob/mcad116}{10.1093/aob/mcad116}
\item Barnes AC, Myers JL, Surber SM, \textbf{Liang Z}, Mower JP, \textbf{Schnable JC}, Roston RL (2023) Oligogalactolipid production during cold challenge is conserved in early diverging lineages. \textsc{Journal of Experimental Botany} doi: \href{https://doi.org/10.1093/jxb/erad241}{10.1093/jxb/erad241}
\item Barnes AC, Myers JL, Surber SM, \textbf{Liang Z}, Mower JP, \textbf{Schnable JC}, Roston RL$^\S$ (2023) Oligogalactolipid production during cold challenge is conserved in early diverging lineages. \textsc{Journal of Experimental Botany} doi: \href{https://doi.org/10.1093/jxb/erad241}{10.1093/jxb/erad241}
\item Chen J, Wang Z, Tan K, Huang W, Shi J, Li T, Hu J, Wang K, Xin B, Zhao H, Song W, Hufford MB, \textbf{Schnable JC}, Ware DH, Jin W, Lai J$^\S$ (2023) A complete telomere-to-telomere assembly of the maize genome. \textsc{Nature Genetics} doi: \href{https://doi.org/10.1038/s41588-023-01419-6}{10.1038/s41588-023-01419-6}\\
\textbf{\textit{ Selected as an Editor's Choice by MaizeGDB Editorial Board}} August 2023
......@@ -352,6 +355,8 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\item \textbf{Sun G}, Yu H, Wang P, Lopez-Guerrero MG, \textbf{Mural RV}, \textbf{Mizero ON}$^\ddagger$, \textbf{Grzybowski M}, Song B, van Dijk K, Schachtman DP, Zhang C, \textbf{Schnable JC}$^\S$ (2023) A role for heritable transcriptomic variation in maize adaptation to temperate environments. \textsc{Genome Biology} doi: \href{https://doi.org/10.1186/s13059-023-02891-3}{10.1186/s13059-023-02891-3}\\
\textbf{\textit{ Selected as an Editor's Choice by MaizeGDB Editorial Board}} August 2023
\item Lima DC, Aviles AC, Alpers RT … \textbf{Schnable JC} (24th of 35 authors) … Weldekidan T, Xu W, de Leon N$^\S$ (2023) 2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative. \textsc{BMC Research Notes} doi: \href{https://doi.org/10.1186/s13104-023-06430-y}{10.1186/s13104-023-06430-y}
\item Gaillard M, Benes B, \textbf{Tross MC}, \textbf{Schnable JC} (2023) Multi-view triangulation without correspondences. \textsc{Computers and Electronics in Agriculture} doi: \href{https://doi.org/10.1016/j.compag.2023.107688}{10.1016/j.compag.2023.107688}
\item \textbf{Grzybowski M}$^\S$, \textbf{Mural RV}, Xu G, \textbf{Turkus, J}, Yang Jinliang, \textbf{Schnable JC} (2023) A common resequencing-based genetic marker dataset for global maize diversity. \textsc{The Plant Journal} doi: \href{https://doi.org/10.1111/tpj.16123}{10.1111/tpj.16123}\\
......@@ -370,7 +375,7 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\item Khound R, \textbf{Sun G}, \textbf{Mural RV}, \textbf{Schnable JC}, Santra D$^\S$ (2022) SNP Discovery in Proso millet (\textit{Panicum miliaceum} L.) using low-pass genome sequencing. \textsc{Plant Direct} doi: \href{https://doi.org/10.1002/pld3.447}{10.1002/pld3.447}
\item Zhang K, Yang Y, Zhang X, Zhang L, Fu Y, Guo Z, Chen S, Wu J, \textbf{Schnable JC}, Yi K, Wang X, Cheng F$^\S$ (2022) The genome of *Orychophragmus violaceus* provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits. \textsc{Plant Communications} doi: \href{https://doi.org/10.1016/j.xplc.2022.100431}{10.1016/j.xplc.2022.100431}
\item Zhang K, Yang Y, Zhang X, Zhang L, Fu Y, Guo Z, Chen S, Wu J, \textbf{Schnable JC}, Yi K, Wang X, Cheng F$^\S$ (2022) The genome of \textit{Orychophragmus violaceus} provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits. \textsc{Plant Communications} doi: \href{https://doi.org/10.1016/j.xplc.2022.100431}{10.1016/j.xplc.2022.100431}
\item \textbf{Mural RV}, \textbf{Sun G}, \textbf{Grzybowski M}, \textbf{Tross MC}, \textbf{Jin H}, \textbf{Smith C}, Newton L, Andorf CM, Woodhouse MR, Thompson AM, \textbf{Sigmon B}, \textbf{Schnable JC}$^\S$ (2022) Association mapping across a multitude of traits collected in diverse environments identifies pleiotropic loci in maize. \textsc{Gigascience} doi: \href{https://doi.org/10.1093/gigascience/giac080}{10.1093/gigascience/giac080} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.02.25.480753}{10.1101/2022.02.25.480753}
......@@ -641,7 +646,7 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\subsection*{Peer Reviewed Conference Papers}
\begin{etaremune}
\item Noh M, Sium F, Tope S, Khan S, Karkhanis M, Wang L, Deshpande A, Dalapati R, \textbf{Mural RV}, Mastrangelo C, Zang L, Ji M, \textbf{Schnable JC}, Kim H (2023) Localization of crop damage utilizing a wake up gas sensor network. \textsc{Transducers 2023} Kyoto, Japan
\item Noh M, Sium F, Tope S, Khan S, Karkhanis M, Wang L, Deshpande A, Dalapati R, \textbf{Mural RV}, Mastrangelo C, Zang L, Ji M, \textbf{Schnable JC}, Kim H (2023) Localization of crop damage utilizing a wake up gas sensor network. \textsc{Transducers 2023} Kyoto, Japan
\item Khan SH, Karkhanis M, Hatasaka B, Tope S, Noh S, Bulbul A, Banerjee A, Ji M, Mastrangelo CH, Kim H, Dalapati R, Zang L, \textbf{Mural RV}, \textbf{Schnable JC}, Kim K (2022) Field deployment of a nanogap gas sensor for crop damage detection. \textsc{35th International Conference on Micro Electro Mechanical Systems Conference (MEMS)} Berlin, Germany doi: \href{https://doi.org/10.1109/MEMS51670.2022.9699614}{10.1109/MEMS51670.2022.9699614}
\item Khan SH, Tope S, Dalpati R, Kim KH, Noh M, Bulbul A, \textbf{Mural RV}, Banerjee A, \textbf{Schnable JC}, Ji M, Mastrango C, Zang L, Kim H (2021) Development of a gas sensor for green leaf volatile detection. \textsc{Transducers 2021} doi: \href{https://doi.org/10.1109/Transducers50396.2021.9495597}{10.1109/Transducers50396.2021.9495597}
\item Gaillard M, \textbf{Miao C}, \textbf{Schnable JC}, Benes B (2020) Sorghum Segmentation by Skeleton Extraction. \textsc{Computer Vision Problems in Plant Phenotyping (CVPPP 2020)} Glasgow, UK
......@@ -660,6 +665,8 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
%OTHER PUBS
\subsection*{Selected Other Publications}
\begin{etaremune}
\item \textbf{Liang Z}, \textbf{Meng X}, \textbf{Schnable JC} (2023) A transferable machine learning framework for predicting transcriptional responses of genes across species.
Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann and Klaas Vandepoele Publisher: Springer, New York, NY.
\item Clark J, Qiu Y, \textbf{Schnable JC}. (2019) Experimental design for controlled environment high throughput plant phenotyping. High Throughput Plant Phenotyping: Methods and Protocols. Editor: Argelia Lorence Publisher: Springer, New York, NY.
\item Tang H, Lyons E, {\bf Schnable JC} (2013) Early history of the angiosperms. Genomes of Herbaceus Land Plants. Editor: Andrew Paterson Publisher: Academic Press
\item Goff SA, {\bf Schnable JC}, Feldmann KA (2013) The evolution of plant gene and genome sequencing. Genomes of Herbaceous Land Plants Editor: Andrew Paterson Publisher: Academic Press
......@@ -788,9 +795,11 @@ Science Advances
\emph{Invited presentations only. Excludes presentations selected based on abstracts or applications.}
\end{center}
\begin{itemize}
\item Purdue Plant Science Symposium (Student Organized), West Lafayette, IN USA\hfill2023
\item IROS (Intelligent Robots and Systems), Detroit, MI USA\hfill2023
\item Sorghum in the 21st Century, Montpellier, France\hfill2023
\item Corteva Symposium Series, North of Rio de Janeiro State University (Student Organized), Campos dos Goytacazes, Brazil\hfill2023\textit{(Remote)}
\item Iowa Biotech Showcase, Ankeny, IA\hfill2023
\item Iowa Biotech Showcase, Ankeny, IA USA\hfill2023
\item SFBV (French Society of Plant Biology), Montpellier, France\hfill 2022
\item Plant Response to Stresses and Environmental Signals, Beijing, China\hfill 2022 \textit{(Remote)}
\item IPPN-CEPPG Workshop on Environment Simulation and Phenotyping, Gatersleben, Germany\hfill 2022 \textit{(Remote)}
......@@ -831,6 +840,7 @@ Science Advances
\end{itemize}
\subsection*{Internal}
\begin{itemize}
\item Animal Schence Departmental Seminar Series, UNL, \hfill 2023
\item CROPS Entrepreneurship/Industry Career Panel (Student Organized), UNL\hfill2023
\item Complex Biosystems Seminar Series, UNL\hfill2021 \textit{(In Person, COVID)}
\item Agronomy \& Horticulture Departmental Seminar Series, UNL\hfill2020 \textit{(Remote, COVID)}
......
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