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Commit 250825b3 authored by James C Schnable's avatar James C Schnable
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...@@ -2,11 +2,11 @@ ...@@ -2,11 +2,11 @@
%https://github.com/rossibarra/CV %https://github.com/rossibarra/CV
\documentclass[letterpaper]{article} \documentclass[letterpaper]{article}
\usepackage{CJKutf8} %\usepackage{CJKutf8}
\usepackage{hyperref} \usepackage{hyperref}
\usepackage{geometry} \usepackage{geometry}
\usepackage{etaremune} \usepackage{etaremune}
\usepackage{fixltx2e} %\usepackage{fixltx2e}
\usepackage{pgf} \usepackage{pgf}
\usepackage{float} \usepackage{float}
\usepackage{textcomp} \usepackage{textcomp}
...@@ -86,7 +86,7 @@ ...@@ -86,7 +86,7 @@
\vspace{0.25in} \vspace{0.25in}
\centerline{\huge \textsc{\name}} \centerline{\huge \textsc{\name}}
%Updated transliteration of Schnable, thanks to Zhikai Liang %Updated transliteration of Schnable, thanks to Zhikai Liang
\centerline{\begin{CJK*}{UTF8}{gbsn}詹姆斯 . 施耐博\end{CJK*}} %\centerline{\begin{CJK*}{UTF8}{gbsn}詹姆斯 . 施耐博\end{CJK*}}
% Alternatively, print name centered and bold: % Alternatively, print name centered and bold:
%\centerline{\huge \bf \name} %\centerline{\huge \bf \name}
...@@ -130,11 +130,11 @@ ...@@ -130,11 +130,11 @@
\\Associate Professor, Department of Agronomy and Horticulture \hfill 2019-2022 \\Associate Professor, Department of Agronomy and Horticulture \hfill 2019-2022
\\Assistant Professor, Department of Agronomy and Horticulture \hfill 2014-2019 \\Assistant Professor, Department of Agronomy and Horticulture \hfill 2014-2019
\item Alphabet, Google, X\\ \item Alphabet, Google, X\\
Interim Technology Lead \hfill 2022 Technology Lead \textit{(Interim)} \hfill 2022
\item Chinese Academy of Agricultural Sciences\\ \item Danforth Plant Science Center \& Chinese Academy of Agricultural Sciences\\
NSF PGRP Fellowship Supported Visiting Scholar \hfill 2014 NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014
\item Donald Danforth Plant Science Center\\ %\item Donald Danforth Plant Science Center\\
NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013 %NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013
\end{itemize} \end{itemize}
%EDUCATION %EDUCATION
...@@ -177,7 +177,7 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013 ...@@ -177,7 +177,7 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013
\item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M \item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M
\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2023. \$4M \item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2023. \$4M
\item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2023. \$5M \item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2023. \$5M
\item NSF ``AI Institute for Resilient Agriculture'' (Investigator) 2021-2026 \$20M \item NSF ``\href{https://aiira.iastate.edu/}{AI Institute for Resilient Agriculture}'' (Investigator) 2021-2026 \$20M
%\item DOE-JGI Community Sequencing Program ``Expanding grass genome comparators.'' %\item DOE-JGI Community Sequencing Program ``Expanding grass genome comparators.''
\end{itemize} \end{itemize}
...@@ -218,13 +218,14 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013 ...@@ -218,13 +218,14 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013
\textit{Designs, manufactures, and deploys low-cost, instant readout, high-performance, field-based nutrient sensors for crops, soil, and water, improving agronomic management practices, increasing grower profitability and reducing the environmental footprint of agriculture.} \textit{Designs, manufactures, and deploys low-cost, instant readout, high-performance, field-based nutrient sensors for crops, soil, and water, improving agronomic management practices, increasing grower profitability and reducing the environmental footprint of agriculture.}
\item Founder, \href{http://www.drylandgenetics.com/}{Dryland Genetics LLC}\hfill2014-Present\\ \item Founder, \href{http://www.drylandgenetics.com/}{Dryland Genetics LLC}\hfill2014-Present\\
\textit{Using high throughput quantitative genetics and field phenotyping techologies to develop and commericialize higher yielding cultivars of crops already naturally adapted to using little water and growing arid regions where conventional agriculture fails in the absence of irrigation.} \textit{Using high throughput quantitative genetics and field phenotyping techologies to develop and commericialize higher yielding cultivars of crops already naturally adapted to using little water and growing arid regions where conventional agriculture fails in the absence of irrigation.}
\item Co-Founder, \href{https://www.data2bio.com/}{Data2Bio LLC} (USA) \& \begin{CJK*}{UTF8}{gbsn}DATA生物科技（北京）有限公司\end{CJK*} (China) \hfill2010-Present\\ %\item Co-Founder, \href{https://www.data2bio.com/}{Data2Bio LLC} (USA) \& \begin{CJK*}{UTF8}{gbsn}DATA生物科技（北京）有限公司\end{CJK*} (China) \hfill2010-Present\\
\item Co-Founder, \href{https://www.data2bio.com/}{Data2Bio LLC} \hfill2010-Present\\
\textit{Providing patented tGBS genotyping and genomic selection services to public and private sector plant and animal breeders in the USA and China.} \textit{Providing patented tGBS genotyping and genomic selection services to public and private sector plant and animal breeders in the USA and China.}
\end{itemize} \end{itemize}
\subsection*{Entrepreneurship-Related Funding} \subsection*{Entrepreneurship-Related Funding}
\begin{itemize} \begin{itemize}
\item NSF (to EnGeniousAg) ``SBIR Phase II: Low-cost in-planta nitrate sensor'' 2023-2025 \$1M %\item NSF (to EnGeniousAg) ``SBIR Phase II: Low-cost in-planta nitrate sensor'' 2023-2025 \$1M
\item NSF (to EnGeniousAg) ``SBIR Phase I: Low-cost in-planta nitrate sensor'' 2019-2022 \$225k \item NSF (to EnGeniousAg) ``SBIR Phase I: Low-cost in-planta nitrate sensor'' 2019-2022 \$225k
\item USDA (to EnGeniousAg) ``SBIR Phase I: Low-cost field-deployable sensors to monitor nitrate in soil and water.'' 2019-2021 \$100k \item USDA (to EnGeniousAg) ``SBIR Phase I: Low-cost field-deployable sensors to monitor nitrate in soil and water.'' 2019-2021 \$100k
\end{itemize} \end{itemize}
...@@ -240,16 +241,16 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013 ...@@ -240,16 +241,16 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013
\section*{Advising} \section*{Advising}
\begin{itemize} \begin{itemize}
\item \textbf{Current Graduate Advisees:} \item \textbf{Current Graduate Advisees:}
Hongyu Jin (PhD, Complex Biosystems),
Michael Tross (PhD, Complex Biosystems), Michael Tross (PhD, Complex Biosystems),
Nikee Shrestha (PhD, Complex Biosystems), Nikee Shrestha (PhD, Complex Biosystems),
Waqar Ali (PhD, Complex Biosystems), Waqar Ali (PhD, Complex Biosystems),
Ramesh Kanna Mathivanan (PhD, Agronomy and Horticulture), Ramesh Kanna Mathivanan (PhD, Agronomy and Horticulture),
Nate Korth (co-advised, PhD, Food Science), Hongyu Jin (co-advised, PhD, Complex Biosystems),
Fangyi Li (co-advised, PhD, Complex Biosystems), Fangyi Li (co-advised, PhD, Complex Biosystems),
Amany Gomma (co-advised, PhD, Plant Pathology),
%Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture), %Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture),
Kyle Linders (co-advised MS, Agronomy \& Horticulture) Kyle Linders (co-advised MS, Agronomy \& Horticulture)
\item \textbf{Thesis Committees:} %\item \textbf{Thesis Committees:}
%Abbas Atefi (PhD, Biological Systems Engineering), %Abbas Atefi (PhD, Biological Systems Engineering),
%Yen Ning Chai (PhD, Agronomy \& Horticulture), %Yen Ning Chai (PhD, Agronomy \& Horticulture),
%Waseen Huassain (PhD, Agronomy \& Horticulture), %Waseen Huassain (PhD, Agronomy \& Horticulture),
...@@ -264,16 +265,17 @@ Kyle Linders (co-advised MS, Agronomy \& Horticulture) ...@@ -264,16 +265,17 @@ Kyle Linders (co-advised MS, Agronomy \& Horticulture)
%Rituaj Khound (PhD, Agronomy \& Horticulture), %Rituaj Khound (PhD, Agronomy \& Horticulture),
%Sergio Manuel Gabriel Peralta (PhD, Plant Pathology), %Sergio Manuel Gabriel Peralta (PhD, Plant Pathology),
%Shimin Chen (PhD, Food Science), %Shimin Chen (PhD, Food Science),
Zachery Shomo (PhD, Biochemistry), %Zachery Shomo (PhD, Biochemistry),
Jared Haupt (PhD, Biochemistry), %Jared Haupt (PhD, Biochemistry),
%Sairam Behera (PhD, Computer Science), %Sairam Behera (PhD, Computer Science),
Sarah Johnson (PhD, Agronomy \& Horticulture), %Sarah Johnson (PhD, Agronomy \& Horticulture),
%Michael Meier (PhD, Agronomy \& Horticulture), %Michael Meier (PhD, Agronomy \& Horticulture),
%Semra Palali (PhD, Agronomy \& Horticulture) %Semra Palali (PhD, Agronomy \& Horticulture)
\item \textbf{Graduated Advisees:} \item \textbf{Graduated Advisees:}
Daniel Carvalho (PhD, Agronomy \& Horticulture), Daniel Carvalho (PhD, Agronomy \& Horticulture),
Zhikai Liang (PhD, Agronomy \& Horticulture), Zhikai Liang (PhD, Agronomy \& Horticulture),
Chenyong Miao (PhD, Agronomy \& Horticulture), Chenyong Miao (PhD, Agronomy \& Horticulture),
Nate Korth (co-advised, PhD, Food Science),
Preston Hurst (MS, Agronomy \& Horticulture), Preston Hurst (MS, Agronomy \& Horticulture),
Xianjun Lai (PhD, Sichuan Agriculture University), Xianjun Lai (PhD, Sichuan Agriculture University),
Xiuru Dai (PhD, Shandong Agriculture University), Xiuru Dai (PhD, Shandong Agriculture University),
...@@ -324,18 +326,21 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg ...@@ -324,18 +326,21 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\begin{etaremune} \begin{etaremune}
\subsection*{Faculty Publications} \subsection*{Faculty Publications}
\item \textbf{Sun G}, Yu H, Wang P, Lopez-Guerrero MG, \textbf{Mural RV}, \textbf{Mizero ON}, \textbf{Grzybowski M}, Song B, van Dijk K, Schachtman DP, Zhang C, \textbf{Schnable JC}$^\S$ (2023) A role for heritable transcriptomic variation in maize adaptation to temperate environments. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.01.28.478212}{10.1101/2022.01.28.478212}\\ \item \textbf{Sun G}, Yu H, Wang P, Lopez-Guerrero MG, \textbf{Mural RV}, \textbf{Mizero ON}$^\ddagger$, \textbf{Grzybowski M}, Song B, van Dijk K, Schachtman DP, Zhang C, \textbf{Schnable JC}$^\S$ (2023) A role for heritable transcriptomic variation in maize adaptation to temperate environments. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.01.28.478212}{10.1101/2022.01.28.478212}
\item Gaillard M, Benes B, \textbf{Tross MC}, \textbf{Schnable JC} (2023) Multi-view triangulation without correspondences. \textsc{Computers and Electronics in Agriculture} doi: \href{https://doi.org/10.1016/j.compag.2023.107688}{10.1016/j.compag.2023.107688} \item Gaillard M, Benes B, \textbf{Tross MC}, \textbf{Schnable JC} (2023) Multi-view triangulation without correspondences. \textsc{Computers and Electronics in Agriculture} doi: \href{https://doi.org/10.1016/j.compag.2023.107688}{10.1016/j.compag.2023.107688}
\item \textbf{Grzybowski M}$^\S$, \textbf{Mural RV}, Xu G, \textbf{Turkus, J}, Yang Jinliang, \textbf{Schnable JC} (2023) A common resequencing-based genetic marker dataset for global maize diversity. \textsc{The Plant Journal} doi: \href{https://doi.org/10.1111/tpj.16123}{10.1111/tpj.16123} \item \textbf{Grzybowski M}$^\S$, \textbf{Mural RV}, Xu G, \textbf{Turkus, J}, Yang Jinliang, \textbf{Schnable JC} (2023) A common resequencing-based genetic marker dataset for global maize diversity. \textsc{The Plant Journal} doi: \href{https://doi.org/10.1111/tpj.16123}{10.1111/tpj.16123}\\
\textbf{\textit{Cover Article, March 2023}} \textbf{\textit{"Research Highlight"}} doi: \href{https://doi.org/10.1111/tpj.16123}{10.1111/tpj.16123}
\item \textbf{Sun G}, Wase N, Shu S, Jenkins J, Zhou B, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Gottilla T, \textbf{Foltz A}, Yu H, O'Malley R, Zhang C, Devos KM, \textbf{Sigmon B}, Yu B, Obata T, Schmutz J$^\S$, \textbf{Schnable JC}$^\S$ (2023) Genome of \textit{Paspalum vaginatum} and the role of trehalose mediated autophagy in increasing maize biomass. \textsc{Nature Communications} doi: \href{https://doi.org/10.1038/s41467-022-35507-8}{10.1038/s41467-022-35507-8} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.08.18.456832}{10.1101/2021.08.18.456832}\\ \item \textbf{Sun G}, Wase N, Shu S, Jenkins J, Zhou B, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Gottilla T, \textbf{Foltz A}$^\ddagger$, Yu H, O'Malley R, Zhang C, Devos KM, \textbf{Sigmon B}, Yu B, Obata T, Schmutz J$^\S$, \textbf{Schnable JC}$^\S$ (2023) Genome of \textit{Paspalum vaginatum} and the role of trehalose mediated autophagy in increasing maize biomass. \textsc{Nature Communications} doi: \href{https://doi.org/10.1038/s41467-022-35507-8}{10.1038/s41467-022-35507-8} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.08.18.456832}{10.1101/2021.08.18.456832}\\
\textbf{\textit{"Research Highlight" in Nature Plants}} doi: \href{https://doi.org/10.1038/s41477-023-01343-x}{10.1038/s41477-023-01343-x} \textbf{\textit{"Research Highlight" in Nature Plants}} doi: \href{https://doi.org/10.1038/s41477-023-01343-x}{10.1038/s41477-023-01343-x}
\item \textbf{Grzybowski M}$^\S$, \textbf{Zweiner M}, \textbf{Jin H}, Wijewardane NK, Atefi A, Naldrett MJ, Alverez S, Ge Y, \textbf{Schnable JC} (2022) Variation in morpho-physiological and metabolic responses to low nitrogen stress across the sorghum association panel. \textsc{BMC Plant Biology} doi: \href{https://doi.org/10.1186/s12870-022-03823-2}{10.1186/s12870-022-03823-2} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.06.08.495271}{10.1101/2022.06.08.495271} \item \textbf{Grzybowski M}$^\S$, \textbf{Zweiner M}, \textbf{Jin H}, Wijewardane NK, Atefi A, Naldrett MJ, Alverez S, Ge Y, \textbf{Schnable JC} (2022) Variation in morpho-physiological and metabolic responses to low nitrogen stress across the sorghum association panel. \textsc{BMC Plant Biology} doi: \href{https://doi.org/10.1186/s12870-022-03823-2}{10.1186/s12870-022-03823-2} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.06.08.495271}{10.1101/2022.06.08.495271}
\item Yang Q, Van Haute M, \textbf{Korth N}, Sattler S, Toy J, Rose D, \textbf{Schnable JC}, Benson A (2022) Genetic analysis of seed traits in Sorghum bicolor that affect the human gut microbiome. \textsc{Nature Communications} doi: \href{https://doi.org/10.1038/s41467-022-33419-1}{10.1038/s41467-022-33419-1} \item Yang Q, Van Haute M, \textbf{Korth N}, Sattler S, Toy J, Rose D, \textbf{Schnable JC}, Benson A (2022) Genetic analysis of seed traits in Sorghum bicolor that affect the human gut microbiome. \textsc{Nature Communications} doi: \href{https://doi.org/10.1038/s41467-022-33419-1}{10.1038/s41467-022-33419-1}\\
\textbf{\textit{"In Brief" in Nature Reviews Genetics}} doi: \href{https://doi.org/10.1038/s41576-022-00543-z}{10.1038/s41576-022-00543-z}\\
\textbf{\textit{"Genome Watch" in Nature Reviews Microbiology}} doi: \href{https://doi.org/10.1038/s41579-022-00850-6}{10.1038/s41579-022-00850-6}
\item Li D, Bai D, Tian Y, Li Y, Zhao C, Wang Q, Gou S, Gu Y, Luan X, Wang R, Yang J, Hawkesford MJ, \textbf{Schnable JC}, Jin X, Qiu L (2022) Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean. \textsc{Journal of Integrative Plant Biology} doi: \href{https://doi.org/10.1111/jipb.13380}{10.1111/jipb.13380} \item Li D, Bai D, Tian Y, Li Y, Zhao C, Wang Q, Gou S, Gu Y, Luan X, Wang R, Yang J, Hawkesford MJ, \textbf{Schnable JC}, Jin X, Qiu L (2022) Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean. \textsc{Journal of Integrative Plant Biology} doi: \href{https://doi.org/10.1111/jipb.13380}{10.1111/jipb.13380}
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