Added a better 'any' file type

chipathlon/conf.py

@@ -39,7 +39,6 @@ peak_tools = [
 
 # File extensions
 file_extensions = {
-    "any": ["fastq", "fastq.gz", "bam"],
     "genome_index": ["fa", "fna"],
     "fastq": ["fastq", "fastq.gz"],
     "sai": ["sai"],
@@ -62,6 +61,7 @@ file_extensions = {
     "ccat_conf": ["txt", "conf"],
     "log": ["log"]
 }
+file_extensions["any"] = [extension for ext_list in file_extensions.values() for extension in ext_list]
 
 # list of resources that can be specified per job (step) in
 # the workflow and corresponding Pegasus profile info