Commits · master · Holland Computing Center / chipathlon · GitLab

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Aug 03, 2017
- Merge branch 'sample-genome-assembly-naming' into 'master' · 17a8dd54
  Adam Caprez authored 7 years ago
  17a8dd54
Jul 19, 2017
- Modify chip-meta-import to first try and set the genome type based on the... · bb113d0e
  Natasha Pavlovikj authored 7 years ago
  bb113d0e
Jul 07, 2017
- Add non-zero exit code. · 12fbb5bc
  Adam Caprez authored 7 years ago
  
  12fbb5bc
Jul 06, 2017
- Add condition to check if file is empty before uploading it to MongoDB · 4e3a45df
  Natasha Pavlovikj authored 7 years ago
  
  4e3a45df
- Merge branch '36-chip-meta-download-should-support-resuming' into 'master' · aef122dc
  Adam Caprez authored 7 years ago
  aef122dc
- Add resume option to meta download script. · b743bb97
  Adam Caprez authored 7 years ago
  b743bb97
Jun 16, 2017
- Updated installation documentation. · 857d585e
  aknecht2 authored 7 years ago
  
  857d585e
Jun 15, 2017
- Added bridges example. Updated chip-gen doc. · 6fc166b6
  aknecht2 authored 7 years ago
  
  6fc166b6
- Added sphinx autodoc for email param. · 4734c43e
  aknecht2 authored 7 years ago
  
  4734c43e
- Fixed up a few more minor issues. · 23d76090
  aknecht2 authored 7 years ago
  
  23d76090
- Removed unnecessary conf argument from chip-gen. · 66a05344
  aknecht2 authored 7 years ago
  
  66a05344
- Added email argument, removed all references to config file. · df112dc4
  aknecht2 authored 7 years ago
  
  df112dc4
- Removed config files as being necessary. Added chip-bin and idr bin argumens... · c98640e1
  aknecht2 authored 7 years ago
  c98640e1
Jun 14, 2017
- Merge branch '26-zerone' into 'master' · f85c8175
  aknecht2 authored 7 years ago
  f85c8175
- Should be broad & sharp for pepr. · c8c9edee
  aknecht2 authored 7 years ago
  
  c8c9edee
- need to include sharp somewhere in peak_call yaml so it gets loaded correctly. · 385d73a0
  aknecht2 authored 7 years ago
  
  385d73a0
- Merge branch '26-zerone' of git.unl.edu:hcc/chipathlon into 26-zerone · cb25ad5e
  aknecht2 authored 7 years ago
  
  cb25ad5e
- Updated pepr yaml files to copy duplicate control / signal files under new name. · fd81dc40
  aknecht2 authored 7 years ago
  
  fd81dc40
- Replace narrow with sharp peak type for PePr · 7e950f2b
  Natasha Pavlovikj authored 7 years ago
  
  7e950f2b
Jun 13, 2017
- Minor doc fixes. · 74836b3c
  aknecht2 authored 7 years ago
  
  74836b3c
Jun 12, 2017
- Updated the getting started example to be up-to-date. · 5443d27d
  aknecht2 authored 7 years ago
  
  5443d27d
- Added two missing links to tools. · 4413357d
  aknecht2 authored 7 years ago
  
  4413357d
- Updated all of the scripts. Made a convenient script for writing the scripts documentation... · 634b135b
  aknecht2 authored 7 years ago
  
  634b135b
- Fixed peak call yaml for pepr. · 549b0ec2
  aknecht2 authored 7 years ago
  
  549b0ec2
- Fixed a validation error with jobs with non-required arguments. Trying to... · e2daefe0
  aknecht2 authored 7 years ago
  e2daefe0
- Added disclaimers to formatting jobs. · eb4146a3
  aknecht2 authored 7 years ago
  
  eb4146a3
- Fixed arguments for pepr peak calling. Updated params in peak_call module to... · 6e23233e
  aknecht2 authored 7 years ago
  6e23233e
- Added more debug statements and fixed file_list parsing in workflow_job. · 0a6048fd
  aknecht2 authored 7 years ago
  
  0a6048fd
- Removed non-existant verbose argument. Removed input/output directory options. · af2ef997
  aknecht2 authored 7 years ago
  
  af2ef997
- Fixed typo in download from gridfs updated localpath to local_path. · b235bd88
  aknecht2 authored 7 years ago
  
  b235bd88
Jun 09, 2017
- Fixed lots of minor bugs to make sure the workflow actually generates! Running tests now. · faac4939
  aknecht2 authored 7 years ago
  
  faac4939
- Finished resolving merge conflicts. There were a lot. · d0f38192
  aknecht2 authored 7 years ago
  
  d0f38192
Jun 08, 2017
- Fixed minor bug with duplicate dependencies being added to the workflow. · ff84032d
  aknecht2 authored 7 years ago
  
  ff84032d
- Merge branch '34-mongodb-auth-should-be-optional' into 'master' · 1fa9a9d1
  aknecht2 authored 7 years ago
  1fa9a9d1
- Updated gen script to use db info as keyword not positional arguments. · ffbdf207
  aknecht2 authored 7 years ago
  
  ffbdf207
- Fixed issues with circular dependncy in utils / db.py · 192ab3ea
  aknecht2 authored 7 years ago
  
  192ab3ea
- Fixed merge conflicts again...? · 69ec65f8
  aknecht2 authored 7 years ago
  
  69ec65f8
- Initial master merge into optional mongo branch. · 3ea96f58
  aknecht2 authored 7 years ago
  
  3ea96f58
- Merge branch '35-workflow-job-parsing-update' · 220af4bf
  aknecht2 authored 7 years ago
  220af4bf
- Merge branch 'bridges-compatability' into 'master' · cb56d4fb
  aknecht2 authored 7 years ago
  cb56d4fb