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Holland Computing Center
chipathlon
Commits
fd81dc40
Commit
fd81dc40
authored
7 years ago
by
aknecht2
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Updated pepr yaml files to copy duplicate control / signal files under new name.
parent
74836b3c
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1 merge request
!34
Resolve "Zerone"
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2 changed files
chipathlon/jobs/modules/peak_call.yaml
+20
-2
20 additions, 2 deletions
chipathlon/jobs/modules/peak_call.yaml
chipathlon/jobs/params/pepr_callpeak.yaml
+12
-6
12 additions, 6 deletions
chipathlon/jobs/params/pepr_callpeak.yaml
with
32 additions
and
8 deletions
chipathlon/jobs/modules/peak_call.yaml
+
20
−
2
View file @
fd81dc40
...
...
@@ -358,12 +358,30 @@ peak_call:
param_name
:
full_result
final_result
:
true
-
pepr[tool]
:
-
cp
:
inputs
:
control.bed
:
param_name
:
input_file
outputs
:
control2.bed
:
param_name
:
output_file
-
cp
:
inputs
:
signal.bed
:
param_name
:
input_file
outputs
:
signal2.bed
:
param_name
:
output_file
-
pepr_callpeak
:
inputs
:
control.bed
:
param_name
:
control.bed
param_name
:
control1.bed
control2.bed
:
param_name
:
control2.bed
signal.bed
:
param_name
:
signal.bed
param_name
:
signal1.bed
signal2.bed
:
param_name
:
signal2.bed
prefix
:
param_name
:
prefix
peak_type
:
...
...
This diff is collapsed.
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chipathlon/jobs/params/pepr_callpeak.yaml
+
12
−
6
View file @
fd81dc40
pepr_callpeak
:
inputs
:
control.bed
:
control
1
.bed
:
type
:
file
file_type
:
bed
signal.bed
:
control2.bed
:
type
:
file
file_type
:
bed
signal1.bed
:
type
:
file
file_type
:
bed
signal2.bed
:
type
:
file
file_type
:
bed
prefix
:
...
...
@@ -26,8 +32,8 @@ pepr_callpeak:
required
:
true
has_value
:
true
default
:
-
$control.bed
-
$control.bed
-
$control
1
.bed
-
$control
2
.bed
-
"
-i"
:
type
:
file_list
separator
:
"
,"
...
...
@@ -35,8 +41,8 @@ pepr_callpeak:
required
:
true
has_value
:
true
default
:
-
$signal.bed
-
$signal.bed
-
$signal
1
.bed
-
$signal
2
.bed
-
"
-n"
:
type
:
string
changeable
:
true
...
...
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