Commit fd81dc40 authored by aknecht2's avatar aknecht2
Browse files

Updated pepr yaml files to copy duplicate control / signal files under new name.

parent 74836b3c
......@@ -358,12 +358,30 @@ peak_call:
param_name: full_result
final_result: true
- pepr[tool]:
- cp:
inputs:
control.bed:
param_name: input_file
outputs:
control2.bed:
param_name: output_file
- cp:
inputs:
signal.bed:
param_name: input_file
outputs:
signal2.bed:
param_name: output_file
- pepr_callpeak:
inputs:
control.bed:
param_name: control.bed
param_name: control1.bed
control2.bed:
param_name: control2.bed
signal.bed:
param_name: signal.bed
param_name: signal1.bed
signal2.bed:
param_name: signal2.bed
prefix:
param_name: prefix
peak_type:
......
pepr_callpeak:
inputs:
control.bed:
control1.bed:
type: file
file_type: bed
signal.bed:
control2.bed:
type: file
file_type: bed
signal1.bed:
type: file
file_type: bed
signal2.bed:
type: file
file_type: bed
prefix:
......@@ -26,8 +32,8 @@ pepr_callpeak:
required: true
has_value: true
default:
- $control.bed
- $control.bed
- $control1.bed
- $control2.bed
- "-i":
type: file_list
separator: ","
......@@ -35,8 +41,8 @@ pepr_callpeak:
required: true
has_value: true
default:
- $signal.bed
- $signal.bed
- $signal1.bed
- $signal2.bed
- "-n":
type: string
changeable: true
......
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