Commit fd81dc40 authored by aknecht2's avatar aknecht2
Browse files

Updated pepr yaml files to copy duplicate control / signal files under new name.

parent 74836b3c
...@@ -358,12 +358,30 @@ peak_call: ...@@ -358,12 +358,30 @@ peak_call:
param_name: full_result param_name: full_result
final_result: true final_result: true
- pepr[tool]: - pepr[tool]:
- cp:
inputs:
control.bed:
param_name: input_file
outputs:
control2.bed:
param_name: output_file
- cp:
inputs:
signal.bed:
param_name: input_file
outputs:
signal2.bed:
param_name: output_file
- pepr_callpeak: - pepr_callpeak:
inputs: inputs:
control.bed: control.bed:
param_name: control.bed param_name: control1.bed
control2.bed:
param_name: control2.bed
signal.bed: signal.bed:
param_name: signal.bed param_name: signal1.bed
signal2.bed:
param_name: signal2.bed
prefix: prefix:
param_name: prefix param_name: prefix
peak_type: peak_type:
......
pepr_callpeak: pepr_callpeak:
inputs: inputs:
control.bed: control1.bed:
type: file type: file
file_type: bed file_type: bed
signal.bed: control2.bed:
type: file
file_type: bed
signal1.bed:
type: file
file_type: bed
signal2.bed:
type: file type: file
file_type: bed file_type: bed
prefix: prefix:
...@@ -26,8 +32,8 @@ pepr_callpeak: ...@@ -26,8 +32,8 @@ pepr_callpeak:
required: true required: true
has_value: true has_value: true
default: default:
- $control.bed - $control1.bed
- $control.bed - $control2.bed
- "-i": - "-i":
type: file_list type: file_list
separator: "," separator: ","
...@@ -35,8 +41,8 @@ pepr_callpeak: ...@@ -35,8 +41,8 @@ pepr_callpeak:
required: true required: true
has_value: true has_value: true
default: default:
- $signal.bed - $signal1.bed
- $signal.bed - $signal2.bed
- "-n": - "-n":
type: string type: string
changeable: true changeable: true
......
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