Merge branch 'cb-edits' into 'master'

Change #!/bin/sh to #!/bin/bash - Merge of all PRs

See merge request !211

content/submitting_jobs/_index.md

@@ -59,7 +59,7 @@ the submit file.
 **SLURM Submit File**
 
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=03:15:00          # Run time in hh:mm:ss
 #SBATCH --mem-per-cpu=1024       # Maximum memory required per CPU (in megabytes)
 #SBATCH --job-name=hello-world

content/submitting_jobs/app_specific/submitting_an_openmp_job.md

@@ -9,7 +9,7 @@ since you must request multiple cores from a single node.
 
 {{% panel theme="info" header="OpenMP example submission" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --ntasks-per-node=16     # 16 cores
 #SBATCH --nodes=1                # 1 node
 #SBATCH --mem-per-cpu=1024       # Minimum memory required per CPU (in megabytes)

content/submitting_jobs/app_specific/submitting_ansys_jobs.md

@@ -19,7 +19,7 @@ For teaching purposes, users need to add
 
 {{% panel theme="info" header="ANSYS.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --ntasks=1
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024

content/submitting_jobs/app_specific/submitting_matlab_jobs.md

@@ -15,7 +15,7 @@ Specifically, these two lines should be added before calling matlab:
 
 {{% panel theme="info" header="serial_matlab.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=03:15:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=[job_name]
@@ -33,7 +33,7 @@ The submit file:
 
 {{% panel theme="info" header="parallel_matlab.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --nodes=1
 #SBATCH --ntasks-per-node=5
 #SBATCH --time=03:15:00

content/submitting_jobs/app_specific/submitting_r_jobs.md

@@ -27,7 +27,7 @@ example:
 
 {{% panel theme="info" header="serial_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=TestJob
@@ -47,7 +47,7 @@ directed to, as follows:
 
 {{% panel theme="info" header="serial_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=TestJob
@@ -66,7 +66,7 @@ with `--args` as follows:
 
 {{% panel theme="info" header="serial_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=TestJob
@@ -87,7 +87,7 @@ using `Rscript` the submit script could look like the following:
 
 {{% panel theme="info" header="serial_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=TestJob
@@ -111,7 +111,7 @@ will follow the script name as in the example below:
 
 {{% panel theme="info" header="serial_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=00:30:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=TestJob
@@ -133,7 +133,7 @@ since both are running multicore jobs on a single node. Below is an example:
 
 {{% panel theme="info" header="parallel_R.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --ntasks-per-node=16
 #SBATCH --nodes=1
 #SBATCH --time=00:30:00
@@ -173,7 +173,7 @@ Below is an example of running Rmpi on Crane on 2 nodes and 32 cores:
 
 {{% panel theme="info" header="Rmpi.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --nodes=2
 #SBATCH --ntasks-per-node=16
 #SBATCH --time=00:30:00

content/submitting_jobs/hcc_acknowledgment_credit.md

@@ -203,7 +203,7 @@ the submit file header.
 {{% panel theme="info" header="**Submit File Example**" %}}
 {{< highlight batch >}}
 [demo01@login.hcc_cluster ~]$ cat submit_test.slurm
-#!/bin/batch
+#!/bin/bash
 #SBATCH --ntasks=4
 #SBATCH --qos=ac_demo
 #SBATCH --ntasks=5

content/submitting_jobs/submitting_a_job_array.md

@@ -16,7 +16,7 @@ in [Submitting Jobs]({{< relref "/guides/submitting_jobs/_index.md" >}}).
 
 {{% panel theme="info" header="example.slurm" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --array=0-31
 #SBATCH --time=03:15:00          # Run time in hh:mm:ss
 #SBATCH --mem-per-cpu=1024       # Minimum memory required per CPU (in megabytes)

content/submitting_jobs/submitting_an_mpi_job.md

@@ -8,7 +8,7 @@ This script requests 16 cores on nodes with InfiniBand:
 
 {{% panel theme="info" header="mpi.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --ntasks=16
 #SBATCH --mem-per-cpu=1024
 #SBATCH --time=03:15:00
@@ -31,7 +31,7 @@ tasks, 16 on each of two nodes:
 
 {{% panel theme="info" header="mpi.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh  
+#!/bin/bash  
 #SBATCH --nodes=2  
 #SBATCH --ntasks-per-node=16  
 #SBATCH --mem-per-cpu=1024  

content/submitting_jobs/submitting_gpu_jobs.md

@@ -103,7 +103,7 @@ CUDA and OpenACC submissions require running on GPU nodes.
 
 {{% panel theme="info" header="cuda.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=03:15:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=cuda
@@ -123,7 +123,7 @@ required to compile as well).
 
 {{% panel theme="info" header="openacc.submit" %}}
 {{< highlight batch >}}
-#!/bin/sh
+#!/bin/bash
 #SBATCH --time=03:15:00
 #SBATCH --mem-per-cpu=1024
 #SBATCH --job-name=cuda-acc