Fix references enough so the site will build.

content/Applications/Application_Specific_Guides/Jupyter.md

...ormance_reports/blast_with_allinea_performance_reports.md

...rformance_reports/ray_with_allinea_performance_reports.md

...cs_tools/alignment_tools/blast/running_blast_alignment.md

...ations/Application_Specific_Guides/dmtcp_checkpointing.md

content/_index.md

content/connecting/_index.md

content/faq/_index.md

content/guides/submitting_jobs/_index.md

content/guides/submitting_jobs/submitting_an_openmp_job.md

content/quickstarts/connecting/for_maclinux_users.md

content/quickstarts/connecting/for_windows_users.md

content/quickstarts/connecting/mobaxterm_windows.md

content/quickstarts/submitting_jobs.md