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Verified Commit eb8e4654 authored by Adam Caprez's avatar Adam Caprez
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Fix relref links.

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...@@ -10,8 +10,8 @@ downloaded from [serial_dir.zip](/attachments/serial_dir.zip). ...@@ -10,8 +10,8 @@ downloaded from [serial_dir.zip](/attachments/serial_dir.zip).
#### Login to a HCC Cluster #### Login to a HCC Cluster
Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux
Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `serial_dir` under the `$WORK` directory. Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `serial_dir` under the `$WORK` directory.
{{< highlight bash >}} {{< highlight bash >}}
$ cd $WORK $ cd $WORK
......
...@@ -10,8 +10,8 @@ scripts can be downloaded from [mpi_dir.zip](/attachments/mpi_dir.zip). ...@@ -10,8 +10,8 @@ scripts can be downloaded from [mpi_dir.zip](/attachments/mpi_dir.zip).
#### Login to a HCC Cluster #### Login to a HCC Cluster
Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux
Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `mpi_dir` under the `$WORK` directory. Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `mpi_dir` under the `$WORK` directory.
{{< highlight bash >}} {{< highlight bash >}}
$ cd $WORK $ cd $WORK
......
...@@ -13,7 +13,7 @@ weight = 20 ...@@ -13,7 +13,7 @@ weight = 20
Use your local terminal to connect to a cluster, or open a new terminal window on [Crane](https://crane.unl.edu). Use your local terminal to connect to a cluster, or open a new terminal window on [Crane](https://crane.unl.edu).
Click [here](https://hcc.unl.edu/docs/quickstarts/connecting/) if you need help connecting to a cluster Click [here](https://hcc.unl.edu/docs/Quickstarts/connecting/) if you need help connecting to a cluster
with a local terminal. with a local terminal.
Click [here](https://hcc.unl.edu/docs/guides/running_applications/jupyter/) if you need Click [here](https://hcc.unl.edu/docs/guides/running_applications/jupyter/) if you need
......
...@@ -30,7 +30,7 @@ Connect]({{< relref "/Data_Transfer/globus_connect" >}}) or an ...@@ -30,7 +30,7 @@ Connect]({{< relref "/Data_Transfer/globus_connect" >}}) or an
SCP client, such SCP client, such
as <a href="https://cyberduck.io/" class="external-link">Cyberduck</a> or <a href="https://winscp.net/eng/index.php" class="external-link">WinSCP</a>. as <a href="https://cyberduck.io/" class="external-link">Cyberduck</a> or <a href="https://winscp.net/eng/index.php" class="external-link">WinSCP</a>.
For help setting up an SCP client, check out our [Quick Start For help setting up an SCP client, check out our [Quick Start
Guides]({{< relref "/quickstarts" >}}). Guides]({{< relref "/Quickstarts" >}}).
For those worried about personal hard drive crashes, UNL For those worried about personal hard drive crashes, UNL
offers <a href="http://nsave.unl.edu/" class="external-link">the backup service NSave</a>. offers <a href="http://nsave.unl.edu/" class="external-link">the backup service NSave</a>.
......
...@@ -8,7 +8,7 @@ The morning sessions will be interactive – attendees should bring a laptop if ...@@ -8,7 +8,7 @@ The morning sessions will be interactive – attendees should bring a laptop if
| Time | Title | Description | | Time | Title | Description |
|---------|-------------------------------------------------------|------------------------------------------------------------------| |---------|-------------------------------------------------------|------------------------------------------------------------------|
| 9 - 10am| Getting started at HCC | HCC 101 (Linux Primer, Job submission) [Quick Start Guides](https://hcc.unl.edu/docs/quickstarts/) | | 9 - 10am| Getting started at HCC | HCC 101 (Linux Primer, Job submission) [Quick Start Guides](https://hcc.unl.edu/docs/Quickstarts/) |
| 10 - 11am | Job management | Creating and deploying parallel jobs at HCC, OSG [Submitting Jobs](https://hcc.unl.edu/docs/guides/submitting_jobs/) | | 10 - 11am | Job management | Creating and deploying parallel jobs at HCC, OSG [Submitting Jobs](https://hcc.unl.edu/docs/guides/submitting_jobs/) |
| 11 - 11:45am | HCC Open Lab | Presentations and help from HCC staff | | 11 - 11:45am | HCC Open Lab | Presentations and help from HCC staff |
| 12 - 1pm | LUNCH lecture with UNIT | Carl Lundstedt: How Big Data Allows Us to Investigate the Smallest Things | | 12 - 1pm | LUNCH lecture with UNIT | Carl Lundstedt: How Big Data Allows Us to Investigate the Smallest Things |
...@@ -17,7 +17,7 @@ The morning sessions will be interactive – attendees should bring a laptop if ...@@ -17,7 +17,7 @@ The morning sessions will be interactive – attendees should bring a laptop if
1. <span style="line-height: 1.4285715;">Getting Started at HCC (9-10am</span> 1. <span style="line-height: 1.4285715;">Getting Started at HCC (9-10am</span>
1. [Getting an account at HCC](https://hcc.unl.edu/new-user-request) 1. [Getting an account at HCC](https://hcc.unl.edu/new-user-request)
2. Logging into HCC resources for [windows](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) or [Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/) 2. Logging into HCC resources for [windows](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) or [Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/)
3. Basic Linux commands 3. Basic Linux commands
4. [Transferring files to HCC](https://hcc.unl.edu/docs/guides/handling_data/) 4. [Transferring files to HCC](https://hcc.unl.edu/docs/guides/handling_data/)
2. Job Management (10-11am) 2. Job Management (10-11am)
......
...@@ -17,8 +17,8 @@ Workshop presentation slides ...@@ -17,8 +17,8 @@ Workshop presentation slides
Password for all demo accounts is **HCC\_condor2013**. Password for all demo accounts is **HCC\_condor2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
- Sample code for Fortran/C on HCC: - Sample code for Fortran/C on HCC:
&lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt; &lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt;
- Sample code for Condor on HCC: - Sample code for Condor on HCC:
...@@ -40,8 +40,8 @@ Password for all demo accounts is **HCC\_matlab2013**. ...@@ -40,8 +40,8 @@ Password for all demo accounts is **HCC\_matlab2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
- Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/) - Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/)
- Sample code for MATLAB on HCC: - Sample code for MATLAB on HCC:
&lt;[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)&gt; &lt;[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)&gt;
......
...@@ -20,8 +20,8 @@ Password for all demo accounts is **HCC\_matlab2013**. ...@@ -20,8 +20,8 @@ Password for all demo accounts is **HCC\_matlab2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` Replace `<group name>` with `demo` and `<username>` with `demoXX`
(e.g. `demo01`). (e.g. `demo01`).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
- Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/) - Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/)
- Sample code for MATLAB on HCC: - Sample code for MATLAB on HCC:
&lt;[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)&gt; &lt;[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)&gt;
......
...@@ -13,8 +13,8 @@ Workshop presentation slides &lt;[mpi\_workshop.pdf](https://unl.box.com/s/7rufq ...@@ -13,8 +13,8 @@ Workshop presentation slides &lt;[mpi\_workshop.pdf](https://unl.box.com/s/7rufq
Password for all demo accounts is **HCC\_mpi2013**. Password for all demo accounts is **HCC\_mpi2013**.
Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`).
- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
- Sample code for Fortran/C on HCC: - Sample code for Fortran/C on HCC:
&lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt; &lt;[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)&gt;
- Sample code for MPI on HCC: - Sample code for MPI on HCC:
......
...@@ -51,9 +51,9 @@ tutorial: [http://bioinformatics.unl.edu/qiime_tutorial.pdf](http://bioinformat ...@@ -51,9 +51,9 @@ tutorial: [http://bioinformatics.unl.edu/qiime_tutorial.pdf](http://bioinformat
Thursday, please arrive at the workshop by 8:30AM to get help. Thursday, please arrive at the workshop by 8:30AM to get help.
2. Once you have your HCC account and DUO set up, please make sure that 2. Once you have your HCC account and DUO set up, please make sure that
you are able to log into the HCC clusters (instructions for [Windows you are able to log into the HCC clusters (instructions for [Windows
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
and [Mac/Linux and [Mac/Linux
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
If you have any problems logging in, please email us at If you have any problems logging in, please email us at
[hcc-support@unl.edu](mailto:hcc-support@unl.edu) [hcc-support@unl.edu](mailto:hcc-support@unl.edu)
3. On Thursday we will be demonstrating how to transfer files using 3. On Thursday we will be demonstrating how to transfer files using
......
...@@ -48,7 +48,7 @@ The link above is no longer available. If you wish to use a terminal in your bro ...@@ -48,7 +48,7 @@ The link above is no longer available. If you wish to use a terminal in your bro
**Linux Commands Reference List:** **Linux Commands Reference List:**
---------------------------------- ----------------------------------
https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/ https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/
**To run MATLAB interactively:** **To run MATLAB interactively:**
-------------------------------- --------------------------------
......
...@@ -47,7 +47,7 @@ found here: [For Mac/Linux Users](https://cyberduck.io/) ...@@ -47,7 +47,7 @@ found here: [For Mac/Linux Users](https://cyberduck.io/)
**Linux Commands Reference List:** **Linux Commands Reference List:**
[https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/](https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/) [https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/](https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/)
......
...@@ -10,7 +10,7 @@ can be downloaded from [condor_dir.zip](/attachments/3178558.zip). ...@@ -10,7 +10,7 @@ can be downloaded from [condor_dir.zip](/attachments/3178558.zip).
#### Login to a HCC Cluster #### Login to a HCC Cluster
Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `condor_dir` under the `$WORK` directory. In the subdirectory `condor_dir`, create job subdirectories that host the input data files. Here we create two job subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in each subdirectory. The data file in `job_0` has a column of data listing the integers from 1 to 5. The data file in `job_1` has a integer list from 6 to 10. Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `condor_dir` under the `$WORK` directory. In the subdirectory `condor_dir`, create job subdirectories that host the input data files. Here we create two job subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in each subdirectory. The data file in `job_0` has a column of data listing the integers from 1 to 5. The data file in `job_1` has a integer list from 6 to 10.
{{< highlight bash >}} {{< highlight bash >}}
$ cd $WORK $ cd $WORK
......
...@@ -21,7 +21,7 @@ users almost immediate access, but the job is subject to preemption. ...@@ -21,7 +21,7 @@ users almost immediate access, but the job is subject to preemption.
#### [New Users Sign Up](http://hcc.unl.edu/new-user-request) #### [New Users Sign Up](http://hcc.unl.edu/new-user-request)
#### [Quick Start Guides](/quickstarts) #### [Quick Start Guides](/Quickstarts)
Which Cluster to Use? Which Cluster to Use?
--------------------- ---------------------
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