Skip to content
Snippets Groups Projects
Commit 79a0d826 authored by James Schnable's avatar James Schnable
Browse files

papers accepted

parent 63f9c27b
Branches
No related tags found
No related merge requests found
...@@ -287,10 +287,6 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg ...@@ -287,10 +287,6 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\noindent Rodene E, Xu G, Delen SP, \textbf{Smith C}, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ A UAV-based high-throughput phenotyping approach to assess time-series nitrogen responses and identify traits associated genetic components in maize. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.05.24.445447}{10.1101/2021.05.24.445447} \\ \noindent Rodene E, Xu G, Delen SP, \textbf{Smith C}, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ A UAV-based high-throughput phenotyping approach to assess time-series nitrogen responses and identify traits associated genetic components in maize. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.05.24.445447}{10.1101/2021.05.24.445447} \\
\noindent \textbf{Sun G}$^\S$, \textbf{Mural RV}, \textbf{Turkus JD}, \textbf{Schnable JC} Quantitative resistance loci to southern rust mapped in a temperate maize diversity panel. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.04.02.438220}{10.1101/2021.04.02.438220} \\
\noindent \textbf{Miao C}, \textbf{Guo A}$^\ddagger$, Yang J, Ge Y, \textbf{Schnable JC}$^\S$ Automation of leaf counting in maize and sorghum using deep learning. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2020.10.27.355495}{10.1101/2020.12.19.423626}\\
\noindent \textbf{Miao C}, \textbf{Hoban TP}$^\ddagger$, \textbf{Pages A}$^\ddagger$, Xu Z, Rodene E, Ubbens J, Stavness I, Yang J, \textbf{Schnable JC}$^\S$ Simulated plant images improve maize leaf counting accuracy. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/706994}{10.1101/706994} \\ \noindent \textbf{Miao C}, \textbf{Hoban TP}$^\ddagger$, \textbf{Pages A}$^\ddagger$, Xu Z, Rodene E, Ubbens J, Stavness I, Yang J, \textbf{Schnable JC}$^\S$ Simulated plant images improve maize leaf counting accuracy. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/706994}{10.1101/706994} \\
\noindent Zhang Z$^\S$, Chen C, Rutkoski J, \textbf{Schnable JC}, Murray S, Wang L, Jin X, Stich B, Crossa J, Hayes B. Harnessing Agronomics Through Genomics and Phenomics in Plant Breeding: A Review. \textsc{preprints.org} doi: \href{https://www.preprints.org/manuscript/202103.0519/v1}{10.20944/preprints202103.0519.v1} \noindent Zhang Z$^\S$, Chen C, Rutkoski J, \textbf{Schnable JC}, Murray S, Wang L, Jin X, Stich B, Crossa J, Hayes B. Harnessing Agronomics Through Genomics and Phenomics in Plant Breeding: A Review. \textsc{preprints.org} doi: \href{https://www.preprints.org/manuscript/202103.0519/v1}{10.20944/preprints202103.0519.v1}
...@@ -301,19 +297,19 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg ...@@ -301,19 +297,19 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\noindent Kusmec A, Yeh CT, AlKhalifa N ... \textbf{Schnable JC} (26th of 38 authors) ... Willis DM, Wisser RJ, Schnable PS$^\S$ Data-driven identification of environmental variables influencing phenotypic plasticity to facilitate breeding for future climates: a case study involving grain yield of hybrid maize. \textit{(In Review)}\\ \noindent Kusmec A, Yeh CT, AlKhalifa N ... \textbf{Schnable JC} (26th of 38 authors) ... Willis DM, Wisser RJ, Schnable PS$^\S$ Data-driven identification of environmental variables influencing phenotypic plasticity to facilitate breeding for future climates: a case study involving grain yield of hybrid maize. \textit{(In Review)}\\
\noindent Serba DD, \textbf{Meng X}, \textbf{Schnable JC}, Bashir E, Michaud JP, Prasad PVV, Perumal R$^\S$ Comparative transcriptome analysis reveals genetic mechanisms of sugarcane aphid resistance in grain sorghum. \textit{(In Review)} \\
\noindent \textbf{Sun G}, Wase N, Shu S, Jenkins J, Zhou B, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Gottilla T, \textbf{Foltz A}, Yu H, O'Malley R, Zhang C, Devos KM, \textbf{Sigmon B}, Yu B, Obata T, Schmutz J$^\S$, \textbf{Schnable JC}$^\S$ Genome sequence of \textit{Paspalum vaginatum} indicates trehalose may act as a conserved trigger for increased nitrogen use efficiency in grasses. \textit{In Review} \\ \noindent \textbf{Sun G}, Wase N, Shu S, Jenkins J, Zhou B, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Gottilla T, \textbf{Foltz A}, Yu H, O'Malley R, Zhang C, Devos KM, \textbf{Sigmon B}, Yu B, Obata T, Schmutz J$^\S$, \textbf{Schnable JC}$^\S$ Genome sequence of \textit{Paspalum vaginatum} indicates trehalose may act as a conserved trigger for increased nitrogen use efficiency in grasses. \textit{In Review} \\
\noindent Hurst JP, \textbf{Schnable JC}, Holding DR$^\S$ Tandem duplicate expression patterns areconserved between maize haplotypes of the $\alpha$-zeingene family. \textit{In Review} \\
\noindent Yu H, Sandhu J, \textbf{Sun G}, Nguyen H, Clemente T, \textbf{Schnable JC}, Walia H, Xie W, Yu B, Mower JP, Zhang C$^\S$ Pervasive misannotation of the smallest microexons that are evolutionarily conserved and crucial for gene function in plants. \textit{In Review} \\ \noindent Yu H, Sandhu J, \textbf{Sun G}, Nguyen H, Clemente T, \textbf{Schnable JC}, Walia H, Xie W, Yu B, Mower JP, Zhang C$^\S$ Pervasive misannotation of the smallest microexons that are evolutionarily conserved and crucial for gene function in plants. \textit{In Review} \\
%\noindent qTeller: A tool for comparative multi-genomic gene expression analysis.
\begin{etaremune} \begin{etaremune}
\subsection*{Faculty Publications} \subsection*{Faculty Publications}
\item \textbf{Miao C}, \textbf{Guo A}$^\ddagger$, Yang J, Ge Y, \textbf{Schnable JC}$^\S$ (2021) Automation of leaf counting in maize and sorghum using deep learning. \textsc{The Plant Phenome Journal} \textit{(Accepted)} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2020.10.27.355495}{10.1101/2020.12.19.423626}
\item Hurst JP, \textbf{Schnable JC}, Holding DR$^\S$ (2021) Tandem duplicate expression patterns are conserved between maize haplotypes of the $\alpha$-zeingene family. \textsc{Plant Direct} \textit{(Accepted)}
\item \textbf{Sun G}$^\S$, \textbf{Mural RV}, \textbf{Turkus JD}, \textbf{Schnable JC} (2021) Quantitative resistance loci to southern rust mapped in a temperate maize diversity panel. \textsc{Phytopathology} doi: \href{https://doi.org/10.1094/PHYTO-04-21-0160-R}{10.1094/PHYTO-04-21-0160-R} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.04.02.438220}{10.1101/2021.04.02.438220}
\item \textbf{Mural RV}, \textbf{Grzybowski M}, \textbf{Miao C}, \textbf{Damke A}$^\ddagger$, Sapkota S, Boyles RE, Salas Fernandez MG, Schnable PS, \textbf{Sigmon B}, Kresovich S, \textbf{Schnable JC}$^\S$ (2021) Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum. \textsc{Genetics} doi: \href{https://doi.org/10.1093/genetics/iyab087}{10.1093/genetics/iyab087} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2020.10.27.355495}{10.1101/2020.10.27.355495} \item \textbf{Mural RV}, \textbf{Grzybowski M}, \textbf{Miao C}, \textbf{Damke A}$^\ddagger$, Sapkota S, Boyles RE, Salas Fernandez MG, Schnable PS, \textbf{Sigmon B}, Kresovich S, \textbf{Schnable JC}$^\S$ (2021) Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum. \textsc{Genetics} doi: \href{https://doi.org/10.1093/genetics/iyab087}{10.1093/genetics/iyab087} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2020.10.27.355495}{10.1101/2020.10.27.355495}
\item \textbf{Grzybowski M}, Wijewardane NK, Atefi A, Ge Y, \textbf{Schnable JC}$^\S$ (2021) The potential of hyperspectral reflectance as a tool for quantitative genetics in crops. \textsc{Plant Communications} doi: \href{https://doi.org/10.1016/j.xplc.2021.100209}{10.1016/j.xplc.2021.100209} \item \textbf{Grzybowski M}, Wijewardane NK, Atefi A, Ge Y, \textbf{Schnable JC}$^\S$ (2021) The potential of hyperspectral reflectance as a tool for quantitative genetics in crops. \textsc{Plant Communications} doi: \href{https://doi.org/10.1016/j.xplc.2021.100209}{10.1016/j.xplc.2021.100209}
...@@ -504,6 +500,8 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg ...@@ -504,6 +500,8 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg
\subsection*{Graduate Publications} \subsection*{Graduate Publications}
\item Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, \textbf{Schnable JC} (2021) qTeller: A tool for comparative multi-genomic gene expression analysis. \textsc{Bioinformatics} \textit{(Accepted Pending Minor Revision)}
\item Cheng F, Sun C, Wu J, {\bf Schnable JC}, Woodhouse MR, Liang J, Cai C, Freeling M,$^\S$ Wang X$^\S$ (2016) Epigenetic regulation of subgenome dominance following whole genome triplication in \textit {Brassica rapa}. \textsc {New Phytologist} doi: \href {http://dx.doi.org/10.1111/nph.13884}{10.1111/nph.13884} \item Cheng F, Sun C, Wu J, {\bf Schnable JC}, Woodhouse MR, Liang J, Cai C, Freeling M,$^\S$ Wang X$^\S$ (2016) Epigenetic regulation of subgenome dominance following whole genome triplication in \textit {Brassica rapa}. \textsc {New Phytologist} doi: \href {http://dx.doi.org/10.1111/nph.13884}{10.1111/nph.13884}
\item Almeida AMR, Yockteng R, {\bf Schnable JC}, Alvarez-Buylla ER, Freeling M, Specht CD$^\S$ (2014) Co-option of the polarity gene network shapes filament morphology in angiosperms. \textsc {Scientific Reports} doi: \href{http://dx.doi.org/10.1038/srep06194}{10.1038/srep06194} \item Almeida AMR, Yockteng R, {\bf Schnable JC}, Alvarez-Buylla ER, Freeling M, Specht CD$^\S$ (2014) Co-option of the polarity gene network shapes filament morphology in angiosperms. \textsc {Scientific Reports} doi: \href{http://dx.doi.org/10.1038/srep06194}{10.1038/srep06194}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment