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...@@ -169,16 +169,14 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014 ...@@ -169,16 +169,14 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014
\subsection*{Federal (Current)} \subsection*{Federal (Current)}
\begin{itemize} \begin{itemize}
\item USDA-NIFA ``Improving Causal Gene Detection across Crop and Livestock Species.'' (co-PI) 2023. \$1.3M \item USDA-NIFA ``Improving Causal Gene Detection across Crop and Livestock Species.'' (co-PI) 2023-2026. \$1.3M
\item DOE ``Phenotypic and Molecular Characterization of Nitrogen Responsive Genes in Sorghum.'' (co-PI) 2022-2025. \$2.7M \item DOE ``Phenotypic and Molecular Characterization of Nitrogen Responsive Genes in Sorghum.'' (co-PI) 2022-2025. \$2.7M
\item DOE ``\href{https://news.unl.edu/newsrooms/today/article/nebraska-team-merges-machine-learning-plant-genetics-to-maximize-sorghum/}{TGCM: (T)rait, (G)ene, and (C)rop Growth (M)odel directed targeted gene characterization in sorghum}.'' (PI) 2019-2023. \$2.7M \item DOE ``\href{https://news.unl.edu/newsrooms/today/article/nebraska-team-merges-machine-learning-plant-genetics-to-maximize-sorghum/}{TGCM: (T)rait, (G)ene, and (C)rop Growth (M)odel directed targeted gene characterization in sorghum}.'' (PI) 2019-2024. \$2.7M
\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1844707}{BTT EAGER: A wearable plant sensor for real-time monitoring of sap flow and stem diameter to accelerate breeding for water use efficiency.}'' (PI) 2019-2023. \$300k \item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1844707}{BTT EAGER: A wearable plant sensor for real-time monitoring of sap flow and stem diameter to accelerate breeding for water use efficiency.}'' (PI) 2019-2024. \$300k
\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022298-high-intensity-phenotyping-sites.html}{High Intensity Phenotyping Sites: Transitioning To A Nationwide Plant Phenotyping Network.}'' (co-PI) 2020-2023. \$3M \item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022298-high-intensity-phenotyping-sites.html}{High Intensity Phenotyping Sites: Transitioning To A Nationwide Plant Phenotyping Network.}'' (co-PI) 2020-2024. \$3M
\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022368-high-intensity-phenotyping-sitesa-multi-scale-multi-modal-sensing-and-sense-making-cyber-ecosystem-for-genomes-to-fields.html}{High Intensity Phenotyping Sites: A multi-scale, multi-modal sensing and sense-making cyber-ecosystem for Genomes to Fields.}'' (co-PI) 2020-2023. \$2.7M \item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022368-high-intensity-phenotyping-sitesa-multi-scale-multi-modal-sensing-and-sense-making-cyber-ecosystem-for-genomes-to-fields.html}{High Intensity Phenotyping Sites: A multi-scale, multi-modal sensing and sense-making cyber-ecosystem for Genomes to Fields.}'' (co-PI) 2020-2024. \$2.7M
\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022122-cps-medium-collaborative-research-field-scale-single-plant-resolution-agricultural-management-using-coupled-molecular-and-macro-sensing-and-multi-scale-data-fusion-and-modeling.html}{CPS: Medium: Field-scale, single plant-resolution agricultural management using coupled molecular and macro sensing and multi-scale data fusion and modeling}'' (co-PI) (2020-2023) \$1.05M \item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2024. \$4M
\item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M \item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2024. \$5M
\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2023. \$4M
\item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2023. \$5M
\item NSF ``\href{https://aiira.iastate.edu/}{AI Institute for Resilient Agriculture}'' (Investigator) 2021-2026 \$20M \item NSF ``\href{https://aiira.iastate.edu/}{AI Institute for Resilient Agriculture}'' (Investigator) 2021-2026 \$20M
%\item DOE-JGI Community Sequencing Program ``Expanding grass genome comparators.'' %\item DOE-JGI Community Sequencing Program ``Expanding grass genome comparators.''
...@@ -187,10 +185,12 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014 ...@@ -187,10 +185,12 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014
\begin{itemize} \begin{itemize}
\item University of Nebraska ``SPACE2: Space, Policy, Agriculture, Climate, and Extreme Environment.'' (co-PI) 2022-2024 \$150k. \item University of Nebraska ``SPACE2: Space, Policy, Agriculture, Climate, and Extreme Environment.'' (co-PI) 2022-2024 \$150k.
\item Nebraska Corn Board ``Genomes to Fields (G2F) - Predicting Final Yield Performance in Variable Environments.'' (PI) 2016-2024. \$350k \textit{(to date)} \item Nebraska Corn Board ``Genomes to Fields (G2F) - Predicting Final Yield Performance in Variable Environments.'' (PI) 2016-2024. \$350k \textit{(to date)}
\item Wheat Innovation Foundation ``A Low-Cost, High-Throughput Cold Stress Perception Assay for Sorghum Breeding.'' (co-PI) 2019-2023. \$205k
\end{itemize} \end{itemize}
\subsection*{Completed Projects} \subsection*{Completed Projects}
\begin{itemize} \begin{itemize}
\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022122-cps-medium-collaborative-research-field-scale-single-plant-resolution-agricultural-management-using-coupled-molecular-and-macro-sensing-and-multi-scale-data-fusion-and-modeling.html}{CPS: Medium: Field-scale, single plant-resolution agricultural management using coupled molecular and macro sensing and multi-scale data fusion and modeling}'' (co-PI) (2020-2023) \$1.05M
\item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M
\item Wheat Innovation Foundation ``A Low-Cost, High-Throughput Cold Stress Perception Assay for Sorghum Breeding.'' (co-PI) 2019-2023. \$205k
\item ICRISAT ``Identifying Novel Loci Controlling Priority Traits in Pearl Millet and Sorghum using Supervised Classification Algorithms.'' (PI) 2020-2021 \$50k \item ICRISAT ``Identifying Novel Loci Controlling Priority Traits in Pearl Millet and Sorghum using Supervised Classification Algorithms.'' (PI) 2020-2021 \$50k
\item ARPA-E ``CORN- Crop Optimization Realized through Neuralnets'' (co-PI) 2020-2022 \$620k \item ARPA-E ``CORN- Crop Optimization Realized through Neuralnets'' (co-PI) 2020-2022 \$620k
\item ARPA-E ``\href{https://unews.utah.edu/protecting-the-field-of-dreams/}{Low cost wireless chemical sensor networks.}'' (co-PI) 2019-2022. \$2.2M \item ARPA-E ``\href{https://unews.utah.edu/protecting-the-field-of-dreams/}{Low cost wireless chemical sensor networks.}'' (co-PI) 2019-2022. \$2.2M
...@@ -249,9 +249,10 @@ Michael Tross (PhD, Complex Biosystems, UNL Life Sciences Fellow), ...@@ -249,9 +249,10 @@ Michael Tross (PhD, Complex Biosystems, UNL Life Sciences Fellow),
Nikee Shrestha (PhD, Complex Biosystems, FFAR Career Development Fellow), Nikee Shrestha (PhD, Complex Biosystems, FFAR Career Development Fellow),
Waqar Ali (PhD, Complex Biosystems, US-Pakistan Knowledge Corridor Scholar), Waqar Ali (PhD, Complex Biosystems, US-Pakistan Knowledge Corridor Scholar),
Jensina Davis (PhD, Complex Biostems, NSF Grad Fellow) Jensina Davis (PhD, Complex Biostems, NSF Grad Fellow)
Ramesh Kanna Mathivanan (PhD, Agronomy and Horticulture),
Hongyu Jin (co-advised, PhD, Complex Biosystems), Hongyu Jin (co-advised, PhD, Complex Biosystems),
Fangyi Li (co-advised, PhD, Complex Biosystems), Fangyi Li (co-advised, PhD, Complex Biosystems),
Ramesh Kanna Mathivanan (MS, Plant Breeding and Genetics),
Harshita Mangal (MS, Plant Breeding and Genetics)
%Amany Gomma (co-advised, PhD, Plant Pathology), %Amany Gomma (co-advised, PhD, Plant Pathology),
%Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture), %Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture),
%\item \textbf{Thesis Committees:} %\item \textbf{Thesis Committees:}
...@@ -289,9 +290,10 @@ Kyle Linders (co-advised MS, Agronomy \& Horticulture) ...@@ -289,9 +290,10 @@ Kyle Linders (co-advised MS, Agronomy \& Horticulture)
Bhushit Agarwal (co-advised, MS, Computer Science \& Engineering), Bhushit Agarwal (co-advised, MS, Computer Science \& Engineering),
Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering) Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering)
\item \textbf{Undergraduate Researchers:} \item \textbf{Undergraduate Researchers:}
7 NSF supported REU (Research Experience for Undergraduates) students; 8 NSF supported REU (Research Experience for Undergraduates) students;
2 USDA supported REEU (Research and Extension Experience for Undergraduates) students;
3 UCARE (Undergraduate Creative Activities and Research Experience) students; 3 UCARE (Undergraduate Creative Activities and Research Experience) students;
and 36 undergraduate students supported by regular research funding. and 51 undergraduate students supported by regular research funding.
\item \textbf{High School Researchers:} \item \textbf{High School Researchers:}
2 students supported through the Young Nebraska Scientist program; 2 students supported through the Young Nebraska Scientist program;
1 supported by regular research funding. 1 supported by regular research funding.
...@@ -299,7 +301,7 @@ Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering) ...@@ -299,7 +301,7 @@ Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering)
\section*{Publications} \section*{Publications}
\begin{center} \begin{center}
\textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{44}} \\ \textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{45}} \\
Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$undergraduate author, $^\S$corresponding author Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$undergraduate author, $^\S$corresponding author
\end{center} \end{center}
...@@ -679,10 +681,11 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann ...@@ -679,10 +681,11 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann
\subsection*{University} \subsection*{University}
\begin{itemize} \begin{itemize}
\item Consortium for Integrated Translational Biology (CITB)\hfill2014-Present \item Consortium for Integrated Translational Biology (CITB)\hfill2014-Present
\item UNL Faculty Greenhouse Committee\hfill2015-Present
\item Nebraska Food for Health Center Faculty Advisory Committee\hfill2017-Present \item Nebraska Food for Health Center Faculty Advisory Committee\hfill2017-Present
\item Department of Agronomy and Horticulture Awards Committee\hfill2019-Present \item Department of Agronomy and Horticulture Promotion and Tenure Committee\hfill2023-Present
\item Department of Agronomy and Horticulture Graduate Admissions Committee\hfill2019-Present \item UNL Faculty Greenhouse Committee\hfill2015-2021
\item Department of Agronomy and Horticulture Awards Committee\hfill2019-2021
\item Department of Agronomy and Horticulture Graduate Admissions Committee\hfill2019-2022
\item Biotech Seminar Series Committee\hfill2017-2019 \item Biotech Seminar Series Committee\hfill2017-2019
\item Agronomy and Horticulture Faculty Advisory Committee\hfill2017-2019 \item Agronomy and Horticulture Faculty Advisory Committee\hfill2017-2019
\item Agronomy and Horticulture Strategic Planning Committee\hfill2018-2019 \item Agronomy and Horticulture Strategic Planning Committee\hfill2018-2019
...@@ -706,6 +709,7 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann ...@@ -706,6 +709,7 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann
\item \textbf{Guest Editor:} The Plant Cell\hfill2019-Present \item \textbf{Guest Editor:} The Plant Cell\hfill2019-Present
\item Data Management Subcommittee, Maize Genetics Research Collaboration Network \hfill 2018-Present \item Data Management Subcommittee, Maize Genetics Research Collaboration Network \hfill 2018-Present
\item MaizeGDB Advisory Committee\hfill 2018-Present \item MaizeGDB Advisory Committee\hfill 2018-Present
\item Host Committee for International Plant Phenotyping Network 2024 Conference\item \hfill2023-Present
\item \textbf{Grant Reviewer:} NSF (panel \& ad hoc), USDA (panel), JGI (panel), Genome British Columbia (ad hoc). \item \textbf{Grant Reviewer:} NSF (panel \& ad hoc), USDA (panel), JGI (panel), Genome British Columbia (ad hoc).
\item \textbf{Peer Reviewer (selected, recent)}: \item \textbf{Peer Reviewer (selected, recent)}:
Bioinformatics, Bioinformatics,
......
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